CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_VIBVY (60 kDa chaperonin 2 OS=Vibrio vulnificus (strain YJ016) GN=groL2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A +K+  GVN LAD V VTLGPKGRNVVL+  YGAP I  DGV+VAK +EL+D  EN+GA++V+Q
Sbjct:    2 AAKDVLFAND--ARQKMLKGVNLLADAVKVTLGPKGRNVVLDKSYGAPSITKDGVSVAKAIELKDKFENMGAQMVKQ 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_VIBVU (60 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A +K+  GVN LAD V VTLGPKGRNVVL+  YGAP I  DGV+VAK +EL+D  EN+GA++V+Q
Sbjct:    2 AAKDVLFAND--ARQKMLKGVNLLADAVKVTLGPKGRNVVLDKSYGAPSITKDGVSVAKAIELKDKFENMGAQMVKQ 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_CORDI (60 kDa chaperonin 2 OS=Corynebacterium diphtheriae GN=groL2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 45/76 (59.21%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N LAD V VTLGPKGRNVVLE  +GAP I NDGV++A+E+ELEDP E IGA+LV++
Sbjct:    2 AKIIAFDEE--ARRGLEKGLNTLADAVKVTLGPKGRNVVLEKSWGAPTITNDGVSIAREIELEDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_PROAC (60 kDa chaperonin 1 OS=Propionibacterium acnes GN=groL1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + FN +  A + L+ G+N LAD V VTLGPKGRNVVLE  +GAP I NDGV++AKE+EL+DP E IGA+LV++
Sbjct:    2 AKLIEFNIE--ARRGLEAGMNTLADAVKVTLGPKGRNVVLEKSWGAPTITNDGVSIAKEIELDDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_ECOK1 (60 kDa chaperonin 1 OS=Escherichia coli O1:K1 / APEC GN=groL1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_ARTS2 (60 kDa chaperonin 1 OS=Arthrobacter sp. (strain FB24) GN=groL1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 45/76 (59.21%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N LAD V VTLGP+GRNVVLE K+GAP I NDGV++AKE+EL+DP E IGA+LV++
Sbjct:    2 AKIIAFDEE--ARRGLERGLNILADAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELDDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_ARTAT (60 kDa chaperonin 1 OS=Arthrobacter aurescens (strain TC1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 45/76 (59.21%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F+++  A + L+ G+N LAD V VTLGP+GRNVVLE K+GAP I NDGV++AKE+EL+DP E IGA+LV++
Sbjct:    2 AKIIAFDEE--ARRGLERGLNILADAVKVTLGPRGRNVVLEKKWGAPTITNDGVSIAKEIELDDPYEKIGAELVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STRA5 (60 kDa chaperonin OS=Streptococcus agalactiae serotype V GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+ D  A   +  GV+ LAD V VTLGPKGRNVVLE  +G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSAD--ARSAMVRGVDILADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STRA3 (60 kDa chaperonin OS=Streptococcus agalactiae serotype III GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+ D  A   +  GV+ LAD V VTLGPKGRNVVLE  +G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSAD--ARSAMVRGVDILADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STRA1 (60 kDa chaperonin OS=Streptococcus agalactiae serotype Ia GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+ D  A   +  GV+ LAD V VTLGPKGRNVVLE  +G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSAD--ARSAMVRGVDILADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSE 75          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_VIBVY4.214e-1861.0460 kDa chaperonin 2 OS=Vibrio vulnificus (strain Y... [more]
CH602_VIBVU4.214e-1861.0460 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 ... [more]
CH602_CORDI4.214e-1859.2160 kDa chaperonin 2 OS=Corynebacterium diphtheriae... [more]
CH601_PROAC4.214e-1860.5360 kDa chaperonin 1 OS=Propionibacterium acnes GN=... [more]
CH601_ECOK14.214e-1859.7460 kDa chaperonin 1 OS=Escherichia coli O1:K1 / AP... [more]
CH601_ARTS24.214e-1859.2160 kDa chaperonin 1 OS=Arthrobacter sp. (strain FB... [more]
CH601_ARTAT4.214e-1859.2160 kDa chaperonin 1 OS=Arthrobacter aurescens (str... [more]
CH60_STRA55.503e-1861.8460 kDa chaperonin OS=Streptococcus agalactiae sero... [more]
CH60_STRA35.503e-1861.8460 kDa chaperonin OS=Streptococcus agalactiae sero... [more]
CH60_STRA15.503e-1861.8460 kDa chaperonin OS=Streptococcus agalactiae sero... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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