CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 1
Query:  364 GVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            GVN+LAD V VTLGPKGRNVVLE K+G P I  DGVTVAKE+EL+DP+EN+GA++VR+
Sbjct:   18 GVNQLADAVKVTLGPKGRNVVLEKKFGGPTITKDGVTVAKEIELKDPLENMGAQMVRE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_SODGM (60 kDa chaperonin OS=Sodalis glossinidius (strain morsitans) GN=groL PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_SODGL (60 kDa chaperonin OS=Sodalis glossinidius GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_PHOLL (60 kDa chaperonin OS=Photorhabdus luminescens subsp. laumondii GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGSD--ARVKMLRGVNILADAVKVTLGPKGRNVVLDKSFGAPAITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LACSS (60 kDa chaperonin OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK+L F++D  A  K+  GV++LA+ V  TLGPKGRNVVLE  YG+P+I NDGVT+AK +ELED  EN+GAKLV +
Sbjct:    2 AKELKFSED--ARSKMLAGVDQLANTVKTTLGPKGRNVVLEKAYGSPEITNDGVTIAKAIELEDHFENMGAKLVSE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LACBA (60 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK+L F++D  A  K+  GV+KLA+ V  TLGPKGRNVVLE  YG P I NDGVT+AK +ELED  EN+GAKLV +
Sbjct:    2 AKELKFSED--ARSKMLAGVDKLANTVKTTLGPKGRNVVLEQSYGNPTITNDGVTIAKAIELEDHFENMGAKLVSE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_HAEPS (60 kDa chaperonin OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLKGVNVLADAVKVTLGPKGRNVVLDKAFGAPTITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_HAEIG (60 kDa chaperonin OS=Haemophilus influenzae (strain PittGG) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNV+L+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLKGVNVLADAVKVTLGPKGRNVILDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_HAEIE (60 kDa chaperonin OS=Haemophilus influenzae (strain PittEE) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNV+L+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLKGVNVLADAVKVTLGPKGRNVILDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_HAEI8 (60 kDa chaperonin OS=Haemophilus influenzae (strain 86-028NP) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNV+L+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLKGVNVLADAVKVTLGPKGRNVILDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKE 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SOLUE5.503e-1872.4160 kDa chaperonin OS=Solibacter usitatus (strain E... [more]
CH60_SODGM5.503e-1859.7460 kDa chaperonin OS=Sodalis glossinidius (strain ... [more]
CH60_SODGL5.503e-1859.7460 kDa chaperonin OS=Sodalis glossinidius GN=groL ... [more]
CH60_PHOLL5.503e-1859.7460 kDa chaperonin OS=Photorhabdus luminescens subs... [more]
CH60_LACSS5.503e-1860.5360 kDa chaperonin OS=Lactobacillus sakei subsp. sa... [more]
CH60_LACBA5.503e-1861.8460 kDa chaperonin OS=Lactobacillus brevis (strain ... [more]
CH60_HAEPS5.503e-1859.7460 kDa chaperonin OS=Haemophilus parasuis serovar ... [more]
CH60_HAEIG5.503e-1858.4460 kDa chaperonin OS=Haemophilus influenzae (strai... [more]
CH60_HAEIE5.503e-1858.4460 kDa chaperonin OS=Haemophilus influenzae (strai... [more]
CH60_HAEI85.503e-1858.4460 kDa chaperonin OS=Haemophilus influenzae (strai... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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