CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CYTH3 (60 kDa chaperonin OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 43/76 (56.58%), Postives = 62/76 (81.58%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK + F++D  A +KL+ GV+ LAD V VTLGPKGRNV+L+ K+G+P I  DGV+VAK++EL+D +EN+GA+LV++
Sbjct:    2 AKQILFDRD--AREKLKKGVDALADAVKVTLGPKGRNVILDKKFGSPAITKDGVSVAKDIELKDAIENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOPE (60 kDa chaperonin OS=Clostridium perfringens GN=groL PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 44/76 (57.89%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F ++  A + +Q GV+KLA+ V VTLGPKGRNV+L+ K+G+P I NDGVT+A+E+ELED  EN+GA+LV++
Sbjct:    2 AKTLLFGEE--ARRSMQAGVDKLANTVKVTLGPKGRNVILDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CLOP1 (60 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 44/76 (57.89%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F ++  A + +Q GV+KLA+ V VTLGPKGRNV+L+ K+G+P I NDGVT+A+E+ELED  EN+GA+LV++
Sbjct:    2 AKTLLFGEE--ARRSMQAGVDKLANTVKVTLGPKGRNVILDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_BLOPB (60 kDa chaperonin OS=Blochmannia pennsylvanicus (strain BPEN) GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_BLOFL (60 kDa chaperonin OS=Blochmannia floridanus GN=groL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_VIBVY (60 kDa chaperonin 1 OS=Vibrio vulnificus (strain YJ016) GN=groL1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V+Q
Sbjct:    2 AAKDVKFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKQ 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_VIBVU (60 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V+Q
Sbjct:    2 AAKDVKFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKQ 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_RHOPA (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris GN=groL1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F+ D  A  ++  GV+ LA+ V VTLGPKGRNV++E  +GAP+I  DGVTVAKEVELED  EN+GA++VR+
Sbjct:    2 AAKDVKFSGD--ARDRMLRGVDVLANAVKVTLGPKGRNVLIEKSFGAPRITKDGVTVAKEVELEDKFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 41/68 (60.29%), Postives = 57/68 (83.82%), Query Frame = 1
Query:  334 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            D  A + L+ G++ LA+ V VTLGPKGRNVVLE K+GAP+I+NDGVT+AKE+ELE+ +EN GA+L+++
Sbjct:    8 DETARRALERGIDALANAVRVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELENKLENTGAQLIKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 44/77 (57.14%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F++D  A +++  GV+ LAD V VTLGPKGRNVVL+  +GAP+I  DGV+VAKE+EL+D  EN+GA+++R+
Sbjct:    2 AAKDVKFSRD--ARERILRGVDILADAVKVTLGPKGRNVVLDKAFGAPRITKDGVSVAKEIELKDKFENMGAQMLRE 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CYTH35.503e-1856.5860 kDa chaperonin OS=Cytophaga hutchinsonii (strai... [more]
CH60_CLOPE5.503e-1857.8960 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]
CH60_CLOP15.503e-1857.8960 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH60_BLOPB5.503e-1859.7460 kDa chaperonin OS=Blochmannia pennsylvanicus (s... [more]
CH60_BLOFL5.503e-1859.7460 kDa chaperonin OS=Blochmannia floridanus GN=gro... [more]
CH601_VIBVY5.503e-1859.7460 kDa chaperonin 1 OS=Vibrio vulnificus (strain Y... [more]
CH601_VIBVU5.503e-1859.7460 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 ... [more]
CH601_RHOPA5.503e-1859.7460 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_GLOVI5.503e-1860.2960 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_ZYMMO7.187e-1857.1460 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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