CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:1..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_TRYCR (Chaperonin HSP60, mitochondrial OS=Trypanosoma cruzi GN=HSP60 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  289 RTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            R+   +A K++ F  +  A + +Q GV +    V  TLGPKGRNV++E  YGAPKI  DGVTVAK +E +DP EN+GA+LVRQ
Sbjct:    3 RSAARFAGKEIRFGTE--ARQSMQKGVQRAVSAVATTLGPKGRNVIIEQSYGAPKITKDGVTVAKAIEFKDPFENMGAQLVRQ 83          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STRU0 (60 kDa chaperonin OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+ D  A   +  GV+ LAD V VTLGPKGRNVVLE  +G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSADARAA--MVRGVDILADTVKVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STRAG (60 kDa chaperonin OS=Streptococcus agalactiae GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+ D  A   +  GV+ LAD V VTLGPKGRNVVLE  +G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSAD--ARSAMVRGVDILADTVFVTLGPKGRNVVLEKAFGSPLITNDGVTIAKEIELEDHFENMGAKLVSE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_PROVI (60 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+ D  A  KL+ GV+KLA+ V VTLGP GRNV+++ K+GAP    DGVTVAKEVELED +EN+GA++VR+
Sbjct:    3 AKDILFDADARA--KLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEVELEDAIENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_PROMH (60 kDa chaperonin OS=Proteus mirabilis (strain HI4320) GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGID--ARNKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_NITMU (60 kDa chaperonin OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK++ F+    A  K+ NGVN LAD V VTLGPKGRNVVLE  YG+P I  DGV+VAKE+EL+D  EN+GA++V++
Sbjct:    2 AAKEVKFSDS--ARHKMVNGVNILADAVKVTLGPKGRNVVLERSYGSPTITKDGVSVAKEIELKDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_MYCPN (60 kDa chaperonin OS=Mycoplasma pneumoniae GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AK+L F K+  A  KL  G+NKLAD V VT+GPKG+NV+L  K+  P I NDGVT+AKE+EL DP+ENIGAK++  A
Sbjct:    2 AKELVFGKN--ARNKLLAGINKLADAVKVTVGPKGQNVILGRKFSNPLITNDGVTIAKEIELTDPLENIGAKVISVA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_MANSM (60 kDa chaperonin OS=Mannheimia succiniciproducens (strain MBEL55E) GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLAGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LACLA (60 kDa chaperonin OS=Lactococcus lactis subsp. lactis GN=groL PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            +KD+ F+ D  A   +  G++ LAD V  TLGPKGRNVVLE  YG+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 SKDIKFSSD--ARTAMMRGIDILADTVKTTLGPKGRNVVLEKSYGSPLITNDGVTIAKEIELEDHFENMGAKLVSE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_LACAC (60 kDa chaperonin OS=Lactobacillus acidophilus GN=groL PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            AKD+ F ++  A + L  GV+KLAD V  T+GPKGRNVVLE  YG P I NDGVT+AK +EL+D  EN+GAKLV +A
Sbjct:    2 AKDIKFAEN--ARRSLLKGVDKLADTVKTTIGPKGRNVVLEQSYGNPDITNDGVTIAKSIELKDHYENMGAKLVAEA 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_TRYCR7.187e-1851.81Chaperonin HSP60, mitochondrial OS=Trypanosoma cru... [more]
CH60_STRU07.187e-1861.8460 kDa chaperonin OS=Streptococcus uberis (strain ... [more]
CH60_STRAG7.187e-1861.8460 kDa chaperonin OS=Streptococcus agalactiae GN=g... [more]
CH60_PROVI7.187e-1860.5360 kDa chaperonin OS=Prosthecochloris vibrioformis... [more]
CH60_PROMH7.187e-1859.7460 kDa chaperonin OS=Proteus mirabilis (strain HI4... [more]
CH60_NITMU7.187e-1859.7460 kDa chaperonin OS=Nitrosospira multiformis (str... [more]
CH60_MYCPN7.187e-1859.7460 kDa chaperonin OS=Mycoplasma pneumoniae GN=groL... [more]
CH60_MANSM7.187e-1859.7460 kDa chaperonin OS=Mannheimia succiniciproducens... [more]
CH60_LACLA7.187e-1859.2160 kDa chaperonin OS=Lactococcus lactis subsp. lac... [more]
CH60_LACAC7.187e-1859.7460 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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