CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_GRATL (60 kDa chaperonin, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 1
Query:  343 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            A K L+ G++ L + V +TLGPKGRNVVLE K+GAP+I+NDGVT+AKE+EL+D  EN G  L+RQA
Sbjct:   11 ARKALEKGMDTLVEAVAITLGPKGRNVVLERKFGAPQIINDGVTIAKEIELQDLAENTGVALIRQA 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_GEOBB (60 kDa chaperonin OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK + F+++  A   +  GVN LAD V VTLGPKGRNVV+E  YGAP I  DGVTVAKE+ELED  EN+GA+LV++
Sbjct:    2 AAKIIKFDQE--ARNCILKGVNTLADAVKVTLGPKGRNVVIEKSYGAPLITKDGVTVAKEIELEDKFENMGAQLVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_EMIHU (60 kDa chaperonin, chloroplastic OS=Emiliania huxleyi GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query:  343 AMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQA 540
            A K L+ G++ LA+ V VTLGPKGRNVVLE K+G P+IVNDGVT+AKE+ L+D +EN G  L+RQA
Sbjct:   12 ARKALERGMDILAEAVSVTLGPKGRNVVLEKKFGTPQIVNDGVTIAKEINLQDTLENTGVSLIRQA 77          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CHRSD (60 kDa chaperonin OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK + F+ D  A K++  GVN LAD V VTLGPKGRNVVLE  +G+P +  DGV+VAKE+EL+D  EN+GA++V++
Sbjct:    2 AAKQIKFSDD--ARKRMARGVNVLADAVKVTLGPKGRNVVLEKSFGSPTVTKDGVSVAKEIELKDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CHLP8 (60 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F+ D  A  KL+ GV+KLA+ V VTLGP GRNV+++ K+GAP    DGVTVAKE+ELED  EN+GA++VR+
Sbjct:    2 AAKDILFDSDARA--KLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELEDAFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CAUCR (60 kDa chaperonin OS=Caulobacter crescentus GN=groL PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD++F+ D  A  K+  GVN LA+ V VTLGPKGRNVV+E  +GAP+   DGV+VAKE+EL D  EN+GA+++R+
Sbjct:    2 AAKDVYFSSD--ARDKMLRGVNILANAVKVTLGPKGRNVVIEKSFGAPRTTKDGVSVAKEIELADKFENLGAQMIRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_CAUCN (60 kDa chaperonin OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=groL PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD++F+ D  A  K+  GVN LA+ V VTLGPKGRNVV+E  +GAP+   DGV+VAKE+EL D  EN+GA+++R+
Sbjct:    2 AAKDVYFSSD--ARDKMLRGVNILANAVKVTLGPKGRNVVIEKSFGAPRTTKDGVSVAKEIELADKFENLGAQMIRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_AGRT5 (60 kDa chaperonin OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=groL PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK++ F +   A +K+  GV+ LAD V VTLGPKGRNVV++  +GAP+I  DGV+VAKE+ELED  EN+GA+LVR+
Sbjct:    2 AAKEVKFGRS--AREKMLKGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQLVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH606_BRAJA (60 kDa chaperonin 6 OS=Bradyrhizobium japonicum GN=groL6 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK++ F+ D  A  K+  GV+ LA+ V VTLGPKGRNVVL+  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+
Sbjct:    2 AAKEVKFSVD--ARDKMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_SACEN (60 kDa chaperonin 2 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=groL2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 42/75 (56.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVR 534
            AK + F  D  A + L+ GVN+LAD V VTLGP+GR+VVL+ ++G P++ NDGVT+A+E+ELEDP EN+GA+L +
Sbjct:    2 AKQIAF--DEQARRALERGVNQLADAVKVTLGPRGRHVVLDKQFGGPQVTNDGVTIAREIELEDPYENLGAQLAK 74          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_GRATL7.187e-1862.1260 kDa chaperonin, chloroplastic OS=Gracilaria ten... [more]
CH60_GEOBB7.187e-1861.0460 kDa chaperonin OS=Geobacter bemidjiensis (strai... [more]
CH60_EMIHU7.187e-1863.6460 kDa chaperonin, chloroplastic OS=Emiliania huxl... [more]
CH60_CHRSD7.187e-1857.1460 kDa chaperonin OS=Chromohalobacter salexigens (... [more]
CH60_CHLP87.187e-1859.7460 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH60_CAUCR7.187e-1857.1460 kDa chaperonin OS=Caulobacter crescentus GN=gro... [more]
CH60_CAUCN7.187e-1857.1460 kDa chaperonin OS=Caulobacter crescentus (strai... [more]
CH60_AGRT57.187e-1858.4460 kDa chaperonin OS=Agrobacterium tumefaciens (st... [more]
CH606_BRAJA7.187e-1859.7460 kDa chaperonin 6 OS=Bradyrhizobium japonicum GN... [more]
CH602_SACEN7.187e-1856.0060 kDa chaperonin 2 OS=Saccharopolyspora erythraea... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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