CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_RHISN (60 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR234) GN=groL2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 45/77 (58.44%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK++ F+ +  A +K+  GV+ LA+ V VTLGPKGRNVVL+  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+
Sbjct:    2 AAKEVRFHTE--AREKMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_NITWN (60 kDa chaperonin 2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            +AKD+ F  D  A  K+  GV+ LA+ V VTLGPKGRNVVLE  +GAP+I  DGVTVAKE+EL+D  EN+GA++VR+
Sbjct:    2 SAKDVKFGVD--ARDKMLRGVDILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELDDKFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_BRASB (60 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            +AKD+ F  D  A ++L  GV+ LA+ V VTLGPKGRNV++E  +GAP+I  DGVTVAKE+ELED  EN+GA+L+RQ
Sbjct:    2 SAKDVKFAAD--ARERLIRGVDILANAVKVTLGPKGRNVLIEKSFGAPRITKDGVTVAKEIELEDKYENLGAQLLRQ 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_CHRVO (60 kDa chaperonin 1 OS=Chromobacterium violaceum GN=groL1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK++ F+ +  A +++ NGVN LAD V VTLGPKGRNV+L   +GAP I  DGV+VAKE+EL+DP EN+GA++V++
Sbjct:    2 AAKEVRFHDN--ARERIVNGVNVLADAVKVTLGPKGRNVLLARSFGAPHITKDGVSVAKEIELKDPFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_BRAJA (60 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groL1 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK++ F+ D  A  ++  GV+ LA+ V VTLGPKGRNVV+E  +GAP+I  DGVTVAKE+ELED  EN+GA++VR+
Sbjct:    2 AAKEVKFSTD--ARDRVLRGVDTLANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_WIGBR (60 kDa chaperonin OS=Wigglesworthia glossinidia brevipalpis GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +G+P I  DGV+VA+EVELED  EN+GA+++++
Sbjct:    2 AAKDVKFGND--ARSKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGSPMITKDGVSVAREVELEDKFENMGAQMLKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_VIBHB (60 kDa chaperonin OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_TRYBB (Chaperonin HSP60, mitochondrial OS=Trypanosoma brucei brucei GN=HSP60 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  304 YAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            + AKD+ F  +  A + +  GV +  + V  TLGPKGRNV++E  YGAPKI  DGVTVAK +E +DP EN+GA+LVRQ
Sbjct:    8 FGAKDIRFGTE--ARQSMLKGVQRAVEAVATTLGPKGRNVIIEQSYGAPKITKDGVTVAKSIEFKDPFENMGAQLVRQ 83          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_SULMW (60 kDa chaperonin OS=Sulcia muelleri (strain GWSS) GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 42/76 (55.26%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK++ F+ +  A  KL+ GV+ LA+ V VTLGPKGRNVVL+  +G P++  DGV+VAKE+ELEDP+EN+GA++V++
Sbjct:    2 AKNIQFDIE--ARDKLKKGVDALANAVKVTLGPKGRNVVLQKSFGGPQVTKDGVSVAKEIELEDPIENLGAQMVKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_RHOCS (60 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK++ F  D  A  K+  GV+ LAD V VTLGPKGRNVV+E  +GAP+I  DGVTVAKE+EL D  EN+GA++V++
Sbjct:    2 AAKEVKFGSDARA--KMLRGVDILADAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELSDKFENMGAQMVKE 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_RHISN7.187e-1858.4460 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR23... [more]
CH602_NITWN7.187e-1859.7460 kDa chaperonin 2 OS=Nitrobacter winogradskyi (s... [more]
CH602_BRASB7.187e-1859.7460 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ... [more]
CH601_CHRVO7.187e-1857.1460 kDa chaperonin 1 OS=Chromobacterium violaceum G... [more]
CH601_BRAJA7.187e-1858.4460 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]
CH60_WIGBR9.387e-1858.4460 kDa chaperonin OS=Wigglesworthia glossinidia br... [more]
CH60_VIBHB9.387e-1858.4460 kDa chaperonin OS=Vibrio harveyi (strain ATCC B... [more]
CH60_TRYBB9.387e-1853.85Chaperonin HSP60, mitochondrial OS=Trypanosoma bru... [more]
CH60_SULMW9.387e-1855.2660 kDa chaperonin OS=Sulcia muelleri (strain GWSS)... [more]
CH60_RHOCS9.387e-1858.4460 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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