CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_PELPB (60 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+ D  A  KL+ GV+KLA+ V VTLGP GRNV+++ K+GAP    DGVTVAKE+EL DP EN+GA++VR+
Sbjct:    3 AKDILFDSDARA--KLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELSDPFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_PASMU (60 kDa chaperonin OS=Pasteurella multocida GN=groL PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLAGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_OCHA4 (60 kDa chaperonin OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F +   A +K+  GV+ LAD V VTLGPKGRNVV++  +GAP+I  DGV+VAKE+ELED  EN+GA+++R+
Sbjct:    2 AAKDVKFGRS--AREKMLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMLRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_HAEDU (60 kDa chaperonin OS=Haemophilus ducreyi GN=groL PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            A KD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  YGAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AIKDVKFGND--ARVKMLKGVNILADAVKVTLGPKGRNVVLDKAYGAPTITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_GEOSM (60 kDa chaperonin OS=Geobacter sp. (strain M21) GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK + F+++  A   +  GVN LAD V VTLGPKGRNVV+E  YGAP I  DGVTVAKE+ELED  EN+GA+LV++
Sbjct:    2 AAKLIKFDQE--ARNCILKGVNTLADAVKVTLGPKGRNVVIEKSYGAPLITKDGVTVAKEIELEDKFENMGAQLVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_EUGGR (Chaperonin CPN60, mitochondrial OS=Euglena gracilis GN=HSP60 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 50/92 (54.35%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  262 RQSVALRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            R  V  RR  + K    KD+ F  D  A  K+  GVN+L+  V VTLGPKGRNVV+E  +GAPKI  DGVTVAK +E +D  EN+GA+LVRQ
Sbjct:    3 RAGVLARRGYSSK---GKDILFGVD--ARVKMLAGVNRLSQAVSVTLGPKGRNVVIEQPFGAPKITKDGVTVAKAIEFKDSFENLGAQLVRQ 89          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_EDWI9 (60 kDa chaperonin OS=Edwardsiella ictaluri (strain 93-146) GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +G+P I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGSPAITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_DEIRA (60 kDa chaperonin OS=Deinococcus radiodurans GN=groL PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/76 (59.21%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F++   A + L+ GVN +A+ V VTLGP+GRNVV+E K+G+P I  DGVTVAKEVELED +ENIGA+L+++
Sbjct:    2 AKQLVFDES--ARRSLERGVNAVANAVKVTLGPRGRNVVIEKKFGSPTITKDGVTVAKEVELEDKLENIGAQLLKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_DEIDV (60 kDa chaperonin OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AK L F  D  A + L+ GVN +A+ V VTLGP+GRNVV+E K+G+P I  DGVTVAKEVELED +ENIGA+L+++
Sbjct:    2 AKQLVF--DEAARRSLERGVNAVANAVKVTLGPRGRNVVIEKKFGSPTITKDGVTVAKEVELEDKLENIGAQLLKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_COLP3 (60 kDa chaperonin OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVV++  +G P I  DGVTVAKE+EL+D  EN+GA++V++
Sbjct:    2 AAKDVLFGND--ARTKMLRGVNVLADAVKVTLGPKGRNVVIDKSFGGPTITKDGVTVAKEIELDDKFENMGAQMVKE 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PELPB9.387e-1859.2160 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH60_PASMU9.387e-1859.7460 kDa chaperonin OS=Pasteurella multocida GN=groL... [more]
CH60_OCHA49.387e-1857.1460 kDa chaperonin OS=Ochrobactrum anthropi (strain... [more]
CH60_HAEDU9.387e-1859.7460 kDa chaperonin OS=Haemophilus ducreyi GN=groL P... [more]
CH60_GEOSM9.387e-1861.0460 kDa chaperonin OS=Geobacter sp. (strain M21) GN... [more]
CH60_EUGGR9.387e-1854.35Chaperonin CPN60, mitochondrial OS=Euglena gracili... [more]
CH60_EDWI99.387e-1858.4460 kDa chaperonin OS=Edwardsiella ictaluri (strain... [more]
CH60_DEIRA9.387e-1859.2160 kDa chaperonin OS=Deinococcus radiodurans GN=gr... [more]
CH60_DEIDV9.387e-1860.5360 kDa chaperonin OS=Deinococcus deserti (strain V... [more]
CH60_COLP39.387e-1858.4460 kDa chaperonin OS=Colwellia psychrerythraea (st... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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