CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_ACTSZ (60 kDa chaperonin OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNV+L+  +GAP I  DGV+VA+E+ELED  EN+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLAGVNVLADAVKVTLGPKGRNVILDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F+ D  A ++L  GV+ LA+ V VTLGPKGRNVV+E  +G+P+I  DGVTVAKE+EL D  EN+GA++VR+
Sbjct:    2 AAKDVRFSAD--ARERLIRGVDLLANAVKVTLGPKGRNVVIEKSFGSPRITKDGVTVAKEIELADKFENMGAQMVRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH603_BRASO (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ORS278) GN=groL3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F+ D  A  ++  GV+ LA+ V VTLGPKGRNVV+E  +GAP+I  DGVTVAKE+ELED  EN+GA+++R+
Sbjct:    2 AAKDVKFSGD--ARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMLRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH602_VIBC3 (60 kDa chaperonin 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++
Sbjct:    2 AAKDVRFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_VIBPA (60 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=groL1 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_VIBHA (60 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++
Sbjct:    2 AAKDVKFGND--ARVKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_VIBCH (60 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++
Sbjct:    2 AAKDVRFGND--ARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_SPHAL (60 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=groL1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 43/77 (55.84%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F++D  A +++  GV+ LAD V VTLGPKGRNVV++  +GAP+I  DGV+VAKE+EL+D  EN+GA+++R+
Sbjct:    2 AAKDVKFSRD--ARERILKGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELKDKFENMGAQMLRE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_FRASC (60 kDa chaperonin 1 OS=Frankia sp. (strain CcI3) GN=groL1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L FN+D  A + L++GVN LA+ V VT+GP+GRNVV++  YGA  I NDGVT+A+E+ELEDP EN+GA+L ++
Sbjct:    3 KILTFNED--ARRALEHGVNALANAVKVTIGPRGRNVVIDKHYGAATITNDGVTIAREIELEDPYENLGAQLAKE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH601_AZOC5 (60 kDa chaperonin 1 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAK++ F   G A +K+  GV+ LA+ V VTLGPKGRNVV+E  +GAP+I  DGV+VAKE+ELED  EN+GA+LVR+
Sbjct:    2 AAKEVKFA--GEAREKMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVSVAKEIELEDKFENLGAQLVRE 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ACTSZ9.387e-1858.4460 kDa chaperonin OS=Actinobacillus succinogenes (... [more]
CH60_ACICJ9.387e-1858.4460 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]
CH603_BRASO9.387e-1858.4460 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ... [more]
CH602_VIBC39.387e-1858.4460 kDa chaperonin 2 OS=Vibrio cholerae serotype O1... [more]
CH601_VIBPA9.387e-1858.4460 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=... [more]
CH601_VIBHA9.387e-1858.4460 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=... [more]
CH601_VIBCH9.387e-1858.4460 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE... [more]
CH601_SPHAL9.387e-1855.8460 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=... [more]
CH601_FRASC9.387e-1857.3360 kDa chaperonin 1 OS=Frankia sp. (strain CcI3) G... [more]
CH601_AZOC59.387e-1859.7460 kDa chaperonin 1 OS=Azorhizobium caulinodans (s... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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