CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_VIBFM (60 kDa chaperonin OS=Vibrio fischeri (strain MJ11) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++
Sbjct:    2 AAKDVKFGND--ARIKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_VIBF1 (60 kDa chaperonin OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AAKD+ F  D  A  K+  GVN LAD V VTLGPKGRNVVL+  +GAP I  DGV+VA+E+ELED  +N+GA++V++
Sbjct:    2 AAKDVKFGND--ARIKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKE 76          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STRSV (60 kDa chaperonin OS=Streptococcus sanguinis (strain SK36) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+ D  A   +  GV+ LA+ V VTLGPKGRNVVLE  +G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSAD--ARSSMVRGVDILANTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STRSA (60 kDa chaperonin OS=Streptococcus sanguis GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  310 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            AKD+ F+ D  A   +  GV+ LA+ V VTLGPKGRNVVLE  +G+P I NDGVT+AKE+ELED  EN+GAKLV +
Sbjct:    2 AKDIKFSAD--ARSSMVRGVDILANTVKVTLGPKGRNVVLEKSFGSPLITNDGVTIAKEIELEDHFENMGAKLVSE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAAW (60 kDa chaperonin OS=Staphylococcus aureus (strain MW2) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAAU (60 kDa chaperonin OS=Staphylococcus aureus GN=groL PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAAT (60 kDa chaperonin OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAAS (60 kDa chaperonin OS=Staphylococcus aureus (strain MSSA476) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAAR (60 kDa chaperonin OS=Staphylococcus aureus (strain MRSA252) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAAN (60 kDa chaperonin OS=Staphylococcus aureus (strain N315) GN=groL PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_VIBFM1.226e-1758.4460 kDa chaperonin OS=Vibrio fischeri (strain MJ11)... [more]
CH60_VIBF11.226e-1758.4460 kDa chaperonin OS=Vibrio fischeri (strain ATCC ... [more]
CH60_STRSV1.226e-1760.5360 kDa chaperonin OS=Streptococcus sanguinis (stra... [more]
CH60_STRSA1.226e-1760.5360 kDa chaperonin OS=Streptococcus sanguis GN=groL... [more]
CH60_STAAW1.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAAU1.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus GN=groL... [more]
CH60_STAAT1.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAAS1.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAAR1.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAAN1.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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