CX287064

Overview
NameCX287064
Unique NameCX287064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAAM (60 kDa chaperonin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=groL PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAAE (60 kDa chaperonin OS=Staphylococcus aureus (strain Newman) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAAC (60 kDa chaperonin OS=Staphylococcus aureus (strain COL) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAAB (60 kDa chaperonin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAA9 (60 kDa chaperonin OS=Staphylococcus aureus (strain JH9) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAA8 (60 kDa chaperonin OS=Staphylococcus aureus (strain NCTC 8325) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAA3 (60 kDa chaperonin OS=Staphylococcus aureus (strain USA300) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAA2 (60 kDa chaperonin OS=Staphylococcus aureus (strain JH1) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_STAA1 (60 kDa chaperonin OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  313 KDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            K L F++D  A + +  GV++LA+ V VT+GPKGRNVVL+ ++ AP I NDGVT+AKE+ELEDP EN+GAKLV++
Sbjct:    3 KQLKFSED--ARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQE 75          
BLAST of CX287064 vs. ExPASy Swiss-Prot
Match: CH60_RUBXD (60 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groL PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 1
Query:  307 AAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 537
            A K+L FN +  A + L+ GVNKLAD V VTLGPKG+ VVL+ K+G+P I NDGVT+A+E+ELED  EN GA+L+++
Sbjct:    2 AHKELKFNTE--ARQALERGVNKLADAVKVTLGPKGQYVVLDKKFGSPTITNDGVTIAREIELEDIFENQGAQLLKE 76          
The following BLAST results are available for this feature:
BLAST of CX287064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_STAAM1.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAAE1.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAAC1.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAAB1.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAA91.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAA81.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAA31.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAA21.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_STAA11.226e-1758.6760 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH60_RUBXD1.226e-1758.4460 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]

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Properties
Property NameValue
Genbank descriptionC01004C07SK Veg1 Citrus clementina cDNA clone C01004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287064 ID=CX287064; Name=CX287064; organism=Citrus clementina; type=EST; length=540bp
GGGCCCTTTATATTATCAACAAAAGCCACCAACTCTCAGCTCCTACTCTG
CCTGCAGCTCCCCTTATCTCTTTAAACCCTAAAACTCTCGCACTTTCCGC
CGTCTCACAGTTTAAACGAATAAATGGCGTCGACTTTCACTGCCATGTCT
TCCATTAGCTCCATGATTGCTCCTAATGGACGAATGACTGATAAGAAGCT
TGCATCTTCTTCGAACAAATTGTCATCACTTGCTTCCATTTCTTCAAGTT
CATTCGGCAGGAGACAGAGTGTAGCTCTACGCAGGGCCCGCACACCTAAG
ATTTATGCGGCAAAGGACTTGCATTTCAACAAGGATGGATATGCCATGAA
GAAACTTCAAAATGGTGTCAACAAGCTTGCAGATCTAGTTGGAGTTACCC
TTGGTCCCAAGGGCAGGAATGTTGTTCTAGAGAGCAAGTACGGTGCCCCA
AAAATTGTGAATGATGGTGTAACTGTGGCCAAAGAAGTTGAGTTAGAGGA
CCCGGTTGAGAACATTGGTGCTAAATTAGTGAGACAAGCA
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