CX287367
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 2.590e-35 Identity = 62/78 (79.49%), Postives = 72/78 (92.31%), Query Frame = 2 Query: 62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 295 L+ G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISFI AKPPGV Sbjct: 103 LEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 2.424e-33 Identity = 63/84 (75.00%), Postives = 72/84 (85.71%), Query Frame = 2 Query: 50 WVA*LQ---KGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 W+ L+ KG+V+RE+HRSPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISFIA KP G Sbjct: 96 WIPCLEFCPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 7.053e-33 Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 2 Query: 62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 289 L+ G+VYREHHRSPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E + YP++F+RIIGFDN RQVQCISFIA KPP Sbjct: 101 LEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.571e-32 Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 2 Query: 71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG Sbjct: 94 GFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 2.052e-32 Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 2 Query: 62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 L+ G+VYRE+HRSPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G Sbjct: 106 LETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 2.052e-32 Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 2 Query: 62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 L+ G+VYRE+HRSPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G Sbjct: 106 LEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 2.680e-32 Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = 2 Query: 62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 295 L+ G+VYREH+RSPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIGFDNKRQVQ ISFIA KPPGV Sbjct: 105 LEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 2.680e-32 Identity = 58/74 (78.38%), Postives = 68/74 (91.89%), Query Frame = 2 Query: 71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG Sbjct: 33 GFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 3.500e-32 Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 2 Query: 65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 ++G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G Sbjct: 104 ERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 3.500e-32 Identity = 58/74 (78.38%), Postives = 68/74 (91.89%), Query Frame = 2 Query: 71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG Sbjct: 95 GFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168 The following BLAST results are available for this feature:
BLAST of CX287367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 113
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287367 ID=CX287367; Name=CX287367; organism=Citrus clementina; type=EST; length=404bpback to top |