CX287395

Overview
NameCX287395
Unique NameCX287395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 9.077e-40
Identity = 75/145 (51.72%), Postives = 99/145 (68.28%), Query Frame = 1
Query:   10 DSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            +S+ LI YF+ I G+ +I   YNPATWMLEV++ S EA LG+DFA++Y  S LY+   EL+  LS+P PGSK+L FPT+Y QS + Q +A LWKQH SYWR+P Y   RF+F I  AL+FG + W  G +    +DL   +GSMY
Sbjct: 1065 ESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMY 1209          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.186e-39
Identity = 73/144 (50.69%), Postives = 98/144 (68.06%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            S  LI+YF+   GV +IK  YNPATWMLEVT+++ E  LG+DF ++Y  S LY+    L++ L  P+PGSK+L F T+Y QS   Q +ACLWKQH SYWR+P Y   RF+F  F AL+FG + W  G +++K +DL   +GSMY
Sbjct: 1078 SCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMY 1221          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 1.186e-39
Identity = 73/146 (50.00%), Postives = 104/146 (71.23%), Query Frame = 1
Query:    7 EDSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            ++S K+IEYFQ I GVP+IK  YNPATWMLEV+S + EA+L +DFA+ Y  S LYQ+   LV  LS P  G+ +L F TR+ QS + Q+ +CLWKQ ++YWR+P+YN+ARF F + AA++ G++ W+ G +     DL  ++G+MY
Sbjct: 1053 QNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMY 1198          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.641e-39
Identity = 74/146 (50.68%), Postives = 103/146 (70.55%), Query Frame = 1
Query:    7 EDSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            + SSK+IEYF  I GVP++K N NPATW+L++TS S+E +LG+D A IY +S L++E   ++ +      GS+ L   +RY Q+S EQ+ ACLWKQHLSYWR+P YN+ R +FM F  +L G +  QK KEIN ++DLF + GSM+
Sbjct: 1029 QHSSKVIEYFMSIPGVPKLKENSNPATWILDITSKSSEDKLGVDLAHIYEESTLFKENKMVIEQTRCTSLGSERLILSSRYAQTSWEQFKACLWKQHLSYWRNPSYNLTRIIFMCFTCMLCGILFLQKAKEINNQQDLFNVFGSMF 1174          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.641e-39
Identity = 74/146 (50.68%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    7 EDSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            + SS +IEYFQ I GV +I+  YNPATWMLEVTS S E EL +DFAKIY +S LY+   ELV  LS+P  GS +L F   + Q+  EQ+ +CLWK  LSYWRSP YN+ R      ++ +FG + W +GK+I+ +++LF +LG++Y
Sbjct: 1052 QHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIY 1197          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.449e-39
Identity = 77/145 (53.10%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   10 DSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            +S  LI YF+GI GV +IK  YNPATWMLEVT+ + E  LG++FA++Y  S LYQ    L++ LS P PGS +L FPT++ Q    Q +ACLWKQH SYWR+P Y   R  F    AL+FG +    GK+INK  DLF  LGSMY
Sbjct: 1086 NSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGTIFLNLGKKINKRLDLFNSLGSMY 1230          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 3.449e-39
Identity = 71/146 (48.63%), Postives = 106/146 (72.60%), Query Frame = 1
Query:    7 EDSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            ++SSK+IEYF+  SG+P+I+ N NPATW+L++TS S E +LG+DF++ Y  S LY++   +V +LS    GS+ LRFP+++ Q++  Q  ACLWKQH SYWR+P +N+ R VF++  + L G + WQK ++IN ++DL  I GSMY
Sbjct: 1039 QNSSKVIEYFESFSGLPKIQKNCNPATWILDITSKSAEEKLGIDFSQSYKDSTLYKQNKMVVEQLSSASLGSEALRFPSQFSQTAWVQLKACLWKQHYSYWRNPSHNITRIVFILLDSTLCGLLFWQKAEDINNQQDLISIFGSMY 1184          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 4.505e-39
Identity = 76/144 (52.78%), Postives = 97/144 (67.36%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            SS LI+YF+ I GV +IK  YNPATWMLEVT+ S E  LGL+FA++Y  S LY+   +L+  LS P PGSK+L F T++ QS + Q LACLWKQH SYWR+P Y   R  F +  AL+FG + W  GK+ +   DL   +GSMY
Sbjct: 1084 SSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFWDLGKKRSTSLDLINAMGSMY 1227          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR2_NICPL (Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.311e-38
Identity = 72/144 (50.00%), Postives = 100/144 (69.44%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            S KL+EYF+ I GVP+I+ + NPATWML+V+S+S EA+L +DFA++Y  S LYQ    L+  LS P   SK+L FPT+Y QS + Q  AC WKQH SYWR+ +YN  RF   +   +LFG + W KG +I++++DL  +LG+ Y
Sbjct: 1100 SHKLVEYFETIPGVPKIRESDNPATWMLDVSSSSMEAQLVVDFAEVYANSNLYQRNQLLIKELSTPATCSKDLYFPTQYSQSFITQCKACFWKQHWSYWRNSQYNAIRFFMTVIIGILFGVIFWNKGNQIHRQQDLLNLLGATY 1243          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.712e-38
Identity = 71/144 (49.31%), Postives = 96/144 (66.67%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            S KL+EYF+ + GVP+I   YNPATWML+VT+ S E+++ LDFA+I+  S LY+   EL+  LS P PGSK++ F T+Y QS   Q  AC WKQ+ SYWR P+YN  RF+  +   +LFG + WQ G +   E+DL    G+MY
Sbjct: 1094 SQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMY 1237          
The following BLAST results are available for this feature:
BLAST of CX287395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB40G_ARATH9.077e-4051.72ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR1_TOBAC1.186e-3950.69Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
AB29G_ARATH1.186e-3950.00ABC transporter G family member 29 OS=Arabidopsis ... [more]
AB43G_ARATH2.641e-3950.68ABC transporter G family member 43 OS=Arabidopsis ... [more]
AB33G_ARATH2.641e-3950.68ABC transporter G family member 33 OS=Arabidopsis ... [more]
PDR7_ORYSJ3.449e-3953.10Putative pleiotropic drug resistance protein 7 OS=... [more]
AB30G_ARATH3.449e-3948.63ABC transporter G family member 30 OS=Arabidopsis ... [more]
TUR2_SPIPO4.505e-3952.78Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR2_NICPL1.311e-3850.00Pleiotropic drug resistance protein 2 OS=Nicotiana... [more]
AB39G_ARATH1.712e-3849.31ABC transporter G family member 39 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC01009A12SK Veg1 Citrus clementina cDNA clone C01009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287395 ID=CX287395; Name=CX287395; organism=Citrus clementina; type=EST; length=445bp
CGGCACGAGGATTCAAGCAAACTTATTGAATACTTCCAAGGTATTTCAGG
GGTGCCACAAATCAAAGCTAATTACAACCCAGCAACATGGATGTTAGAAG
TCACTTCTGCATCAACTGAAGCAGAACTCGGGTTAGATTTTGCCAAAATT
TATCTCAAGTCACCTCTATATCAGGAAACCATAGAGTTGGTGAACCGGTT
GAGTGAACCACAGCCAGGTTCAAAAGAATTACGCTTTCCCACTCGTTACC
CTCAAAGTAGCATGGAGCAGTATCTGGCATGCCTGTGGAAACAACACTTA
TCATACTGGAGAAGTCCTGAATATAACATGGCTCGTTTTGTTTTTATGAT
CTTTGCAGCACTGCTTTTTGGTGCAGTTGTTTGGCAGAAAGGGAAGGAAA
TCAATAAAGAAGAGGATTTGTTTGTCATACTTGGATCGATGTACA
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