CX287395

Overview
NameCX287395
Unique NameCX287395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.893e-37
Identity = 66/146 (45.21%), Postives = 104/146 (71.23%), Query Frame = 1
Query:    7 EDSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            + S  +IEYF+ +  +P+IK N+NPATWML+V+S S E ELG+DFAKIY  S LY+   ELV +LS+P  GS +++F   + QS   Q+ + LWK +LSYWRSP YN+ R +  + ++L+FGA+ W++G+ ++ ++ +F + G++Y
Sbjct: 1089 QHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIY 1234          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB32G_ARATH (ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.217e-37
Identity = 69/146 (47.26%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    7 EDSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            + S +LI+YF+ I GV +IK  +NPA WML+VT+++ E  LG+DFA+IY  S L Q   EL+  LS+P   +KE+ FPTRY QS   Q++ACLWKQ+LSYWR+P+Y   RF + +  +L+ G + W+ G + + ++ LF  +GSMY
Sbjct: 1057 QKSCELIKYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGSMY 1202          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.217e-37
Identity = 67/144 (46.53%), Postives = 96/144 (66.67%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            S  L++YFQGI+GVP I + YNPATWMLEVT+ + E +  ++FA +Y KS  ++E    + +LS P  GS+ + F +RY Q+ + Q+L CLWKQ+L YWRSPEYN+ R VF   AA + G V W  G +    +DL  ++G++Y
Sbjct: 1067 SQVLVDYFQGINGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALY 1210          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 5.507e-37
Identity = 69/144 (47.92%), Postives = 95/144 (65.97%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            S  LI+YF+ I GV +I   YNPATWMLEVT++S E  LG+DF  +Y KS LY+    L++ LS P+PG+ +L F + + Q    Q +ACLWKQH SYWR+P Y   R +F  F AL+FG + W  G ++++ +DL   +GSMY
Sbjct: 1079 SCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALIDELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGTMFWDIGTKVSRNQDLVNAMGSMY 1222          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 9.393e-37
Identity = 70/144 (48.61%), Postives = 95/144 (65.97%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            S  L+EYF+ I GVP+I   YNPATWMLEV+S+  EA L +DFA++Y  S LY+   EL+ +LS P PG ++L FPT+Y Q+ + Q +A  WKQ  SYW+ P YN  R+V  +   L+FG V W++GK I    DL  +LG+ Y
Sbjct: 1093 SQILVEYFEAIPGVPKITEGYNPATWMLEVSSSLAEARLDIDFAEVYANSALYRSNQELIKQLSVPPPGFQDLSFPTKYSQNFLNQCVANTWKQFQSYWKDPPYNAMRYVMTLLYGLVFGTVFWRRGKNIESVNDLNNLLGATY 1236          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.602e-36
Identity = 69/144 (47.92%), Postives = 95/144 (65.97%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            S KL+EYF+ I GVP+IK  YNPATWML+VT+ S E+++ +DFA+I++ S + +   EL+  LS P PGS +L F T+Y Q    Q  AC WK + S WR P+YN  RF+  +   +LFG + WQ G +I KE+DL    G+MY
Sbjct: 1093 SQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMY 1236          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.772e-35
Identity = 65/145 (44.83%), Postives = 100/145 (68.97%), Query Frame = 1
Query:   10 DSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            +S K++EYF+   GVP+I   YNPATWMLE +S + E +LG+DFA++Y  S L Q    LV  LS P  G+ +L F T++ Q++  Q+ +CLWKQ  +YWRSP+YN+ RF+F +  +L+ G+V WQ G + +  +DL +++G++Y
Sbjct: 1080 NSHKVVEYFESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIY 1224          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.500e-34
Identity = 66/143 (46.15%), Postives = 94/143 (65.73%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSM 441
            SS+LIEYF+GI GV +IK  YNPATW LEVT+ + E  LG+ FA++Y KS LY+   +L+  L+   P ++++ F T+Y QS + Q+ ACLWKQH SYWR+  YN  RF F     +++G + W  GK     +D+F  +G+M
Sbjct: 1062 SSQLIEYFEGIRGVGKIKEGYNPATWALEVTTRAQEDVLGVTFAQVYKKSNLYRRNKDLIKELNNIPPHAQDIHFSTKYSQSYLSQFQACLWKQHKSYWRNVPYNAVRFSFGAAVGIMYGIIFWSLGKRKGTRQDIFNSVGAM 1204          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.500e-34
Identity = 64/146 (43.84%), Postives = 98/146 (67.12%), Query Frame = 1
Query:    7 EDSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            ++S K++EYF+   GV +I   YNPATWMLE +S + E +L +DFA++Y +S L+Q    LV  LS P  G+ +L F T++ Q++  Q+ +CLWKQ  +YWRSP+YN+ RF+F +  +LL G V WQ G   +   DL +++G++Y
Sbjct: 1106 QNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALY 1251          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.959e-34
Identity = 71/168 (42.26%), Postives = 98/168 (58.33%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQ------------------------ETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            S  L+E+F+ I GVP+I+  YNPA WMLEVTS   E  LG+DFA+ Y +S L+Q                        +T E+V+ LS P+  SKEL F T+Y Q    QY ACLWKQ+LSYWR+P+Y   RF + +  +L+FG + W+ G     + D+F  +G+MY
Sbjct: 1065 SRNLVEFFEAIPGVPKIRDGYNPAAWMLEVTSTQMEQILGVDFAEYYRQSKLFQTQRPFSPLILVSFSLNMFMLWHSRQTQEMVDILSRPRRESKELTFATKYSQPFFAQYAACLWKQNLSYWRNPQYTAVRFFYTVIISLMFGTICWKFGSRRETQHDIFNAMGAMY 1232          
The following BLAST results are available for this feature:
BLAST of CX287395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB37G_ARATH1.893e-3745.21ABC transporter G family member 37 OS=Arabidopsis ... [more]
AB32G_ARATH4.217e-3747.26ABC transporter G family member 32 OS=Arabidopsis ... [more]
AB31G_ARATH4.217e-3746.53ABC transporter G family member 31 OS=Arabidopsis ... [more]
PDR1_NICPL5.507e-3747.92Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR5_ORYSJ9.393e-3748.61Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]
AB34G_ARATH1.602e-3647.92ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB35G_ARATH1.772e-3544.83ABC transporter G family member 35 OS=Arabidopsis ... [more]
AB38G_ARATH1.500e-3446.15ABC transporter G family member 38 OS=Arabidopsis ... [more]
AB36G_ARATH1.500e-3443.84ABC transporter G family member 36 OS=Arabidopsis ... [more]
PDR6_ORYSJ1.959e-3442.26Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC01009A12SK Veg1 Citrus clementina cDNA clone C01009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287395 ID=CX287395; Name=CX287395; organism=Citrus clementina; type=EST; length=445bp
CGGCACGAGGATTCAAGCAAACTTATTGAATACTTCCAAGGTATTTCAGG
GGTGCCACAAATCAAAGCTAATTACAACCCAGCAACATGGATGTTAGAAG
TCACTTCTGCATCAACTGAAGCAGAACTCGGGTTAGATTTTGCCAAAATT
TATCTCAAGTCACCTCTATATCAGGAAACCATAGAGTTGGTGAACCGGTT
GAGTGAACCACAGCCAGGTTCAAAAGAATTACGCTTTCCCACTCGTTACC
CTCAAAGTAGCATGGAGCAGTATCTGGCATGCCTGTGGAAACAACACTTA
TCATACTGGAGAAGTCCTGAATATAACATGGCTCGTTTTGTTTTTATGAT
CTTTGCAGCACTGCTTTTTGGTGCAGTTGTTTGGCAGAAAGGGAAGGAAA
TCAATAAAGAAGAGGATTTGTTTGTCATACTTGGATCGATGTACA
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