CX287395

Overview
NameCX287395
Unique NameCX287395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.084e-32
Identity = 62/145 (42.76%), Postives = 93/145 (64.14%), Query Frame = 1 
Query:   10 DSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            +S  +I YFQGI  V  I   YNPATWMLEVT+ ++E  LG+DFA +Y  S  ++    L+  LS P  G++ L+F + + Q+ + Q++ CL KQ L YWRSPEYN+ R  F   AA++FG++ W  G +    ED+ +++G++Y
Sbjct: 1078 NSVDMINYFQGIPRVVPITEGYNPATWMLEVTTQASEERLGIDFATVYKNSYQFRNVENLIVELSIPASGTEPLKFSSEFSQNRLTQFMVCLRKQSLVYWRSPEYNVVRLFFTSVAAIIFGSIFWNVGMKRESTEDILLLMGALY 1222
The following BLAST results are available for this feature:
BLAST of CX287395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PDR13_ORYSJ4.084e-3242.76Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionC01009A12SK Veg1 Citrus clementina cDNA clone C01009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287395 ID=CX287395; Name=CX287395; organism=Citrus clementina; type=EST; length=445bp
CGGCACGAGGATTCAAGCAAACTTATTGAATACTTCCAAGGTATTTCAGG
GGTGCCACAAATCAAAGCTAATTACAACCCAGCAACATGGATGTTAGAAG
TCACTTCTGCATCAACTGAAGCAGAACTCGGGTTAGATTTTGCCAAAATT
TATCTCAAGTCACCTCTATATCAGGAAACCATAGAGTTGGTGAACCGGTT
GAGTGAACCACAGCCAGGTTCAAAAGAATTACGCTTTCCCACTCGTTACC
CTCAAAGTAGCATGGAGCAGTATCTGGCATGCCTGTGGAAACAACACTTA
TCATACTGGAGAAGTCCTGAATATAACATGGCTCGTTTTGTTTTTATGAT
CTTTGCAGCACTGCTTTTTGGTGCAGTTGTTTGGCAGAAAGGGAAGGAAA
TCAATAAAGAAGAGGATTTGTTTGTCATACTTGGATCGATGTACA
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