CX287413

Overview
NameCX287413
Unique NameCX287413
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PR1B4_ARATH (PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.142e-16
Identity = 39/115 (33.91%), Postives = 65/115 (56.52%), Query Frame = 2
Query:   29 FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTV 367
            F++++  T ++  + RRPW++  D SA + P S+SDA  RI +N ++F+ NY  +    +  SL+ HP S++  L  L +W FLY  R  D P+ + G    DR  +G L   ++
Sbjct:   39 FINQITETVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSI 153          
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PR1B5_ARATH (PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.194e-15
Identity = 46/115 (40.00%), Postives = 62/115 (53.91%), Query Frame = 2
Query:   29 FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTV 367
            F++ V  T     +  RPWS+ LD SAF  P SLS+A TR  +N ++FR NY  I  L L  SL+ HP S+I+ L    +W FLY  R  D PL + G    +   +G L   T+
Sbjct:   39 FVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTI 153          
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PR1G1_ARATH (PRA1 family protein G1 OS=Arabidopsis thaliana GN=PRA1G1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.906e-13
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 2
Query:   11 AASDTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGAL 352
            +A D   LS V     S+++ R  WS+FL   + + P S S A +R+  NL HF  NY ++T  ++ L LI  P++++     +  W  LYF RD PL + G  + DRV++  L
Sbjct:   18 SAGDVISLS-VHNLIASVSSYRPWWSEFLAFGSIDRPSSFSPAVSRVKLNLHHFAVNYVLLTAASITLFLIGDPMALVTVASFVAMWLLLYFYRDHPLVLYGRHISDRVIVFGL 130          
The following BLAST results are available for this feature:
BLAST of CX287413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR1B4_ARATH3.142e-1633.91PRA1 family protein B4 OS=Arabidopsis thaliana GN=... [more]
PR1B5_ARATH1.194e-1540.00PRA1 family protein B5 OS=Arabidopsis thaliana GN=... [more]
PR1G1_ARATH1.906e-1335.09PRA1 family protein G1 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01009C07SK Veg1 Citrus clementina cDNA clone C01009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287413 ID=CX287413; Name=CX287413; organism=Citrus clementina; type=EST; length=445bp
GTCCTTCACCGCCGCAAGCGACACCGGCTTCCTCTCGCGCGTCAAGAGAA
CCACCCAATCCATAAACGCCACGCGTCGCCCTTGGTCCGACTTCCTAGAC
CTGTCCGCATTCAATCTCCCCCTCTCACTCTCCGACGCCACCACTCGCAT
AACCCAAAACCTCACTCACTTTCGCTCTAATTACGCCGTAATCACATTAC
TAGCCCTCTTCTTGAGCCTAATCTACCACCCCGTCTCGATAATCGTCTTC
CTGCTGACCCTCGTGGCGTGGTTCTTCTTGTACTTCGCGCGCGACGACCC
GTTGACGGTCCTCGGGTTTCAGGTGGACGACCGGGTCGTGATCGGTGCGC
TGTTTGCCGTGACGGTGACTGGCTTAGTCTTGACGCACGTGTGGGTTAAC
GTGTTGGTGTCCGTTGTTGTTGGGGCTGTATTGGTAATTTTGCAT
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