CX287806

Overview
NameCX287806
Unique NameCX287806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length324
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP1M1_MOUSE (AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.252e-13
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            +R+E  VK KS F  +  A  V I IPVP       F+ T G  K+      +VW ++ FPG  E  M A   L S  AE K   +PPI ++F++P FT SG++VR+
Sbjct:  289 SRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKE-GKPPISVKFEIPYFTTSGIQVRY 394          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP1M1_HUMAN (AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.252e-13
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            +R+E  +K KS F  +  A  V I IPVP       F+ T G  K+      +VW I+ FPG  E  M A   L S  AE K   +PPI ++F++P FT SG++VR+
Sbjct:  289 SRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYLMRAHFGLPSVEAEDKE-GKPPISVKFEIPYFTTSGIQVRY 394          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP1M1_BOVIN (AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.252e-13
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            +R+E  +K KS F  +  A  V I IPVP       F+ T G  K+      +VW I+ FPG  E  M A   L S  AE K   +PPI ++F++P FT SG++VR+
Sbjct:  289 SRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSIKSFPGGKEYLMRAHFGLPSVEAEDKE-GKPPISVKFEIPYFTTSGIQVRY 394          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP1M1_YEAST (AP-1 complex subunit mu-1-I OS=Saccharomyces cerevisiae GN=APM1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELIS-TMAEKKSWTRP---------PIQMEFQVPMFTASGLRVRF 322
            +R+E++ K K+    K  A  V I IPVP      +F+ + G  KY      ++WKIR FPG  E +MSAE+ L S +  E  + T P         P+Q++FQ+P FT SG++VR+
Sbjct:  328 SRIEIHCKAKAQIKRKSTATNVEILIPVPDDADTPTFKYSHGSLKYVPEKSAILWKIRSFPGGKEYSMSAELGLPSISNNEDGNRTMPKSNAEILKGPVQIKFQIPYFTTSGIQVRY 444          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP2M_SCHPO (AP-2 complex subunit mu OS=Schizosaccharomyces pombe GN=apm4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.384e-12
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 2
Query:   74 KIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            +IPVP    K + +V  G+A Y  S + + WKI +F G+TE    AEVEL +T   ++ W +PPI ++F + MFT+SGL V++
Sbjct:  335 RIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAEVELSNT-TNQQIWAKPPISLDFNILMFTSSGLHVQY 416          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP1M1_SCHPO (AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe GN=apm1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.361e-12
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEK-KSWTRPPIQMEFQVPMFTASGLRVRF 322
            +R+E  VK K+ F  +  A  V I IPVP+      FQ ++G  +Y      +VW I+KF G  E  M AE+ L S   E  +   + P+Q++F +P FT SG++VR+
Sbjct:  289 SRIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRY 396          
The following BLAST results are available for this feature:
BLAST of CX287806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
AP1M1_MOUSE1.252e-1339.25AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1... [more]
AP1M1_HUMAN1.252e-1339.25AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1... [more]
AP1M1_BOVIN1.252e-1339.25AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 P... [more]
AP1M1_YEAST2.789e-1337.61AP-1 complex subunit mu-1-I OS=Saccharomyces cerev... [more]
AP2M_SCHPO1.384e-1242.17AP-2 complex subunit mu OS=Schizosaccharomyces pom... [more]
AP1M1_SCHPO2.361e-1237.04AP-1 complex subunit mu-1 OS=Schizosaccharomyces p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01013E07SK Veg1 Citrus clementina cDNA clone C01013E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287806 ID=CX287806; Name=CX287806; organism=Citrus clementina; type=EST; length=324bp
AACACGTATGGAAGTAAATGTTAAGATAAAGAGTGTCTTTGGTGCAAAAA
TGTTTGCGCTTGGGGTTGTCATCAAAATTCCTGTACCAAAACAGACGGCA
AAGACAAGTTTCCAAGTGACATCAGGCCGGGCAAAGTACAATGCTTCAAT
TGATTGCTTGGTTTGGAAGATAAGAAAATTTCCAGGACAAACTGAGCCAA
CCATGAGTGCAGAGGTTGAGTTGATTTCCACAATGGCCGAAAAGAAATCG
TGGACAAGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACAGC
ATCAGGTTTACGTGTTCGTTTTCT
back to top