CX287806

Overview
NameCX287806
Unique NameCX287806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length324
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP2M_DICDI (AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.789e-27
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTM-AEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            TR+E +V +KS F +KMF   V + IP PK TA     V +G+AKY    D ++W+IR+FPG TE T+ AEVEL++++  +KK+W+RPPI MEFQV MFTASG  VRF
Sbjct:  304 TRLECSVTVKSNFSSKMFGANVKVIIPTPKNTAVCKIVVAAGKAKYMPEQDAIIWRIRRFPGDTEFTLRAEVELMASVNLDKKAWSRPPISMEFQVTMFTASGFSVRF 411          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP2MA_DANRE (AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m1a PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.402e-19
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            T++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +VWKI++  G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  SGL+VR+
Sbjct:  300 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRY 404          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP2M1_XENTR (AP-2 complex subunit mu-1 OS=Xenopus tropicalis GN=ap2m1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.402e-19
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            T++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +VWKI++  G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  SGL+VR+
Sbjct:  299 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRY 403          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP2M1_XENLA (AP-2 complex subunit mu-1 OS=Xenopus laevis GN=ap2m1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.402e-19
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            T++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +VWKI++  G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  SGL+VR+
Sbjct:  299 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRY 403          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP2M1_RAT (AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap2m1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.402e-19
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            T++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +VWKI++  G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  SGL+VR+
Sbjct:  299 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRY 403          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP2M1_PONAB (AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.402e-19
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            T++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +VWKI++  G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  SGL+VR+
Sbjct:  299 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRY 403          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP2M1_MOUSE (AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.402e-19
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            T++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +VWKI++  G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  SGL+VR+
Sbjct:  299 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRY 403          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP2M1_MACFA (AP-2 complex subunit mu-1 OS=Macaca fascicularis GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.402e-19
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            T++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +VWKI++  G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  SGL+VR+
Sbjct:  299 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRY 403          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP2M1_HUMAN (AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.402e-19
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            T++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +VWKI++  G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  SGL+VR+
Sbjct:  299 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRY 403          
BLAST of CX287806 vs. ExPASy Swiss-Prot
Match: AP2M1_CHICK (AP-2 complex subunit mu-1 OS=Gallus gallus GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.402e-19
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRF 322
            T++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +VWKI++  G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  SGL+VR+
Sbjct:  297 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRY 401          
The following BLAST results are available for this feature:
BLAST of CX287806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
AP2M_DICDI5.789e-2753.70AP-2 complex subunit mu OS=Dictyostelium discoideu... [more]
AP2MA_DANRE3.402e-1944.86AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m... [more]
AP2M1_XENTR3.402e-1944.86AP-2 complex subunit mu-1 OS=Xenopus tropicalis GN... [more]
AP2M1_XENLA3.402e-1944.86AP-2 complex subunit mu-1 OS=Xenopus laevis GN=ap2... [more]
AP2M1_RAT3.402e-1944.86AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap... [more]
AP2M1_PONAB3.402e-1944.86AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 P... [more]
AP2M1_MOUSE3.402e-1944.86AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 P... [more]
AP2M1_MACFA3.402e-1944.86AP-2 complex subunit mu-1 OS=Macaca fascicularis G... [more]
AP2M1_HUMAN3.402e-1944.86AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 P... [more]
AP2M1_CHICK3.402e-1944.86AP-2 complex subunit mu-1 OS=Gallus gallus GN=AP2M... [more]

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Properties
Property NameValue
Genbank descriptionC01013E07SK Veg1 Citrus clementina cDNA clone C01013E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287806 ID=CX287806; Name=CX287806; organism=Citrus clementina; type=EST; length=324bp
AACACGTATGGAAGTAAATGTTAAGATAAAGAGTGTCTTTGGTGCAAAAA
TGTTTGCGCTTGGGGTTGTCATCAAAATTCCTGTACCAAAACAGACGGCA
AAGACAAGTTTCCAAGTGACATCAGGCCGGGCAAAGTACAATGCTTCAAT
TGATTGCTTGGTTTGGAAGATAAGAAAATTTCCAGGACAAACTGAGCCAA
CCATGAGTGCAGAGGTTGAGTTGATTTCCACAATGGCCGAAAAGAAATCG
TGGACAAGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACAGC
ATCAGGTTTACGTGTTCGTTTTCT
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