CX288178

Overview
NameCX288178
Unique NameCX288178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 78/163 (47.85%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YRI  G   ++ D L+PGGSFDPLGLA DP+ FA
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 209          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 77/163 (47.24%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L+PGGSFDPLGLA DP+ FA
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFA 209          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 81/166 (48.80%), Postives = 103/166 (62.05%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  DK++PGG+FDPLGLA DPD FA
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFA 205          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 81/166 (48.80%), Postives = 103/166 (62.05%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE  +K G   G EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  DK++PGG+FDPLGLA DPD FA
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFA 205          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 76/163 (46.63%), Postives = 100/163 (61.35%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  G   ++ D L+PGGSFDPLGLA+DP+ FA
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 207          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 79/163 (48.47%), Postives = 100/163 (61.35%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D ++PGG+FDPLGLA DPD FA
Sbjct:   49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFA 207          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.982e-33
Identity = 77/163 (47.24%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G   ++ D L+PGGSFDPLGLA DP+ FA
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 209          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.042e-32
Identity = 79/163 (48.47%), Postives = 102/163 (62.58%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YRI  G   ++ D L+PGG+FDPLGLA DP+ FA
Sbjct:   49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFA 207          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.361e-32
Identity = 79/164 (48.17%), Postives = 98/164 (59.76%), Query Frame = 1
Query:  229 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGSFDPLGLAKDPDQFA 705
            ++YGP+R  +L  G    +  P YLTGE PGDYG+D  GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K G   G EAVWFK GA +     L+Y G    +   N+V     +++L+G  E YR+  G   E  D L+PG SFDPLGLA DPD FA
Sbjct:   35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFA 195          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.778e-32
Identity = 77/163 (47.24%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P  F+K +  E+IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L+PGGSFDPLGLA DP+ FA
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFA 208          
The following BLAST results are available for this feature:
BLAST of CX288178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB2G_SOLLC6.111e-3347.85Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC6.111e-3347.24Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_ORYSJ6.111e-3348.80Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI6.111e-3348.80Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_TOBAC6.111e-3346.63Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_GOSHI6.111e-3348.47Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2A_SPIOL7.982e-3347.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ORYSJ1.042e-3248.47Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_CHLRE1.361e-3248.17Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PETSP1.778e-3247.24Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC01017F01SK Veg1 Citrus clementina cDNA clone C01017F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288178 ID=CX288178; Name=CX288178; organism=Citrus clementina; type=EST; length=705bp
ACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCAT
TGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTA
GGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCT
CTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGC
CGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAA
GAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTAC
TTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAG
CAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATG
CCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTT
AACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGG
AGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACATCC
CAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGT
GCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGACAAGCTTCA
CCCAGGTGGGTCATTTGACCCACTGGGATTAGCAAAGGATCCTGACCAAT
TTGCA
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