CX288178
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 345.895 bits (886), Expect = 1.251e-94 Identity = 168/219 (76.71%), Postives = 184/219 (84.02%), Query Frame = 1 Query: 49 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGSFDPLGLAKDPDQFA 705 +GV EMLG PLN + R+SAP AS+PSTFK VALF ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+GGAEYYRITNGLD EDKLHPGG FDPLGLAKDP+Q A Sbjct: 4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGA 219
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 7.713e-36 Identity = 80/166 (48.19%), Postives = 102/166 (61.45%), Query Frame = 1 Query: 229 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG----LDLEDKLHPGGSFDPLGLAKDPDQFA 705 ++YGPDR FL G ++ PEYLTGE PGDYG+D GLS P F++Y+ ELIHARWA+LGA G + PE +++ E VWFK GA + LNY G I +++ + ++VL+G AE YR G LD D L+PGG FDPLGLA DPD FA Sbjct: 32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFA 195
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 5.527e-34 Identity = 77/163 (47.24%), Postives = 102/163 (62.58%), Query Frame = 1 Query: 232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705 WYGPDR ++L E P YLTGE PGDYG+D GLS P++F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G ++ D ++PGGSFDPLGLA+DP+ FA Sbjct: 58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFA 216
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.231e-33 Identity = 77/163 (47.24%), Postives = 102/163 (62.58%), Query Frame = 1 Query: 232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705 WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +++L+G E YR+ G ++ D ++PGG+FDPLGLA DPD FA Sbjct: 62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFA 220
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.231e-33 Identity = 78/163 (47.85%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705 WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G ++ D L+PGGSFDPLGLA DP+ FA Sbjct: 52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 210
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.231e-33 Identity = 78/163 (47.85%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705 WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G ++ D L+PGGSFDPLGLA DP+ FA Sbjct: 53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 211
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.608e-33 Identity = 77/163 (47.24%), Postives = 102/163 (62.58%), Query Frame = 1 Query: 232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705 WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +++L+G E YR+ G ++ D ++PGG+FDPLGLA DPD FA Sbjct: 62 WYGPDRVMYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFA 220
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.608e-33 Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 1 Query: 232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705 WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE F + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G ++ D L+PGGSFDPLGLA DP+ FA Sbjct: 50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFA 208
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.100e-33 Identity = 79/163 (48.47%), Postives = 103/163 (63.19%), Query Frame = 1 Query: 232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705 WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G ++ D L+PGG+FDPLGLA DP+ FA Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFA 207
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.100e-33 Identity = 80/162 (49.38%), Postives = 101/162 (62.35%), Query Frame = 1 Query: 232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQF 702 WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G ++ D L+PGGSFDPLGLA DP+ F Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 206 The following BLAST results are available for this feature:
BLAST of CX288178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288178 ID=CX288178; Name=CX288178; organism=Citrus clementina; type=EST; length=705bpback to top |