CX288178

Overview
NameCX288178
Unique NameCX288178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.322e-32
Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYG DR ++L  G    S  P YL+GE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  G   ++ED ++PGGSFDPLGLA DP+ FA
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFA 207          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.033e-32
Identity = 73/163 (44.79%), Postives = 100/163 (61.35%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++     +++L+G  E YR+  G   ++ D L+PGGSFDPLGLA+DP++ A
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSA 206          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.033e-32
Identity = 76/163 (46.63%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVW K G+ +     L+Y G    +    + A+ A +++L+G  E YR+  G    + D L+PGGSFDPLGLA+DP+ FA
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFA 209          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.033e-32
Identity = 79/163 (48.47%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G   PE   K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L+PGG+FDPLGLA DPD FA
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFA 207          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.961e-32
Identity = 77/163 (47.24%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D ++PGGSFDPLGLA DPD FA
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFA 210          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.961e-32
Identity = 76/163 (46.63%), Postives = 99/163 (60.74%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+      ++ D L+PGGSFDPLGLA+DP+ FA
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFA 208          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.174e-32
Identity = 76/163 (46.63%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        E P YLTGE PGDYG+D   LS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L+PGGSFDPLGLA DP+ FA
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 209          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.174e-32
Identity = 79/165 (47.88%), Postives = 101/165 (61.21%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGSFDPLGLAKDPDQF 702
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  D+L+PGG+FDPLGLA+DP+ F
Sbjct:   48 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNP---NLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.825e-32
Identity = 82/166 (49.40%), Postives = 101/166 (60.84%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGSFDPLGLAKDPDQFA 705
            WYG DR  FL        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G I PE  +K G   G EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  D L+PGG+FDPLGLA DP+ FA
Sbjct:   48 WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFA 206          
BLAST of CX288178 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.153e-31
Identity = 76/163 (46.63%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  232 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFA 705
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L+PGGSFDPLGLA D + FA
Sbjct:   48 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFA 206          
The following BLAST results are available for this feature:
BLAST of CX288178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB23_POLMU2.322e-3246.63Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_APIGR3.033e-3244.79Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP3.033e-3246.63Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB215_PEA3.033e-3248.47Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2_PHYPA3.961e-3247.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_NICPL3.961e-3246.63Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB25_PETSP5.174e-3246.63Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_SILPR5.174e-3247.88Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_LEMGI8.825e-3249.40Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_HORVU1.153e-3146.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC01017F01SK Veg1 Citrus clementina cDNA clone C01017F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288178 ID=CX288178; Name=CX288178; organism=Citrus clementina; type=EST; length=705bp
ACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCAT
TGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTA
GGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCT
CTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGC
CGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAA
GAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTAC
TTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAG
CAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATG
CCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTT
AACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGG
AGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACATCC
CAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGT
GCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGACAAGCTTCA
CCCAGGTGGGTCATTTGACCCACTGGGATTAGCAAAGGATCCTGACCAAT
TTGCA
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