CX288623

Overview
NameCX288623
Unique NameCX288623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_RHIME (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Rhizobium meliloti GN=fabF PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.465e-32
Identity = 75/181 (41.44%), Postives = 110/181 (60.77%), Query Frame = 2
Query:   23 DKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALS-QRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            D+   GVLIGSG+GG++   DA   LR    ++++PF +P    N+ +  +++     GPN+S+ TAC+T    I +A+  I  G+A++M+ GG+ + +  I L GF AC+ALS Q N++P KASRP+D +RDGFVM             HA+ RGAKIYAE  G   + DA+H+T P  D
Sbjct:  103 DQISTGVLIGSGIGGLEGIVDAGYTLRDKGPRRISPFFIPGRLINLAAGQVSIRHKLRGPNHSVVTACSTGAHAIGDASRLIALGDADVMVAGGTESPICRISLAGFAACKALSTQHNDNPEKASRPYDADRDGFVMGEGAGIVVLEELEHARARGAKIYAEVIGYGLSGDAFHITAPSED 283          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: KASM_ARATH (3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Arabidopsis thaliana GN=KAS PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.887e-30
Identity = 72/186 (38.71%), Postives = 110/186 (59.14%), Query Frame = 2
Query:   17 ELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKK----MNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            E +K + GV IG G+G +    D +EA ++  +K    ++PF +P    NM S  ++M  G+ GPN++  TACAT    I +A   I  G+A++M+ GG+ +++  + + GF   RALS + N+ P +ASRP+D +RDGFV+             HAK+RGAKIYAE  G   + DA+H+T+P  D
Sbjct:  140 EEEKERTGVSIGGGIGSI---CDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPED 322          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_STAAW (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain MW2) GN=fabF PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.876e-28
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            +NE    + GV IGSG+GGM+ F  A + L     ++++PF VP    +M +  +++DLG  GPN +  TACAT    I  A   + RG+A+ M+ GG+ A +  + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+
Sbjct:   94 INENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALS-TNDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPE 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_STAAU (3-oxoacyl-[acyl-carrier-protein] synthase 2 (Fragment) OS=Staphylococcus aureus GN=fabF PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.876e-28
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            +NE    + GV IGSG+GGM+ F  A + L     ++++PF VP    +M +  +++DLG  GPN +  TACAT    I  A   + RG+A+ M+ GG+ A +  + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+
Sbjct:   87 INENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALS-TNDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPE 269          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_STAAS (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain MSSA476) GN=fabF PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.876e-28
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            +NE    + GV IGSG+GGM+ F  A + L     ++++PF VP    +M +  +++DLG  GPN +  TACAT    I  A   + RG+A+ M+ GG+ A +  + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+
Sbjct:   94 INENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALS-TNDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPE 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_STAAR (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain MRSA252) GN=fabF PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.876e-28
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            +NE    + GV IGSG+GGM+ F  A + L     ++++PF VP    +M +  +++DLG  GPN +  TACAT    I  A   + RG+A+ M+ GG+ A +  + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+
Sbjct:   94 INENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALS-TNDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPE 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_STAAC (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain COL) GN=fabF PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.876e-28
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            +NE    + GV IGSG+GGM+ F  A + L     ++++PF VP    +M +  +++DLG  GPN +  TACAT    I  A   + RG+A+ M+ GG+ A +  + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+
Sbjct:   94 INENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALS-TNDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPE 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: OXSM_BOVIN (3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Bos taurus GN=OXSM PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.086e-27
Identity = 66/182 (36.26%), Postives = 101/182 (55.49%), Query Frame = 2
Query:   14 NELDKSKCGVLIGSGLGGMKVFYD-AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHP 556
            +E D++  GV IG G+  ++V  + A+      Y K++PF VP    NM S  +++     GPN+++STAC T    + ++   +  G+A++M+ GG+++ + P+ L GF   RALS  N DP  A RP+   RDGFVM             HA +RGA++YAE  G   + DA H+T P P
Sbjct:  140 SEADQAATGVAIGMGMVPLEVISETALTFQTKGYSKVSPFFVPKILVNMASGQVSIRHKLKGPNHAVSTACTTGAHAVGDSFRFVAHGDADVMVAGGTDSCISPLSLAGFARARALS-TNTDPKSACRPFHPQRDGFVMGEGAAVLVLEEHRHALRRGARVYAEIVGYGLSGDAGHITAPDP 320          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_STAAN (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain N315) GN=fabF PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.086e-27
Identity = 73/184 (39.67%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            +N+    + GV IGSG+GGM+ F  A + L     ++++PF VP    +M +  +++DLG  GPN +  TACAT    I  A   + RG+A+ M+ GG+ A +  + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+
Sbjct:   94 INDNTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALS-TNDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPE 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_STAAM (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fabF PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.086e-27
Identity = 73/184 (39.67%), Postives = 102/184 (55.43%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            +N+    + GV IGSG+GGM+ F  A + L     ++++PF VP    +M +  +++DLG  GPN +  TACAT    I  A   + RG+A+ M+ GG+ A +  + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+
Sbjct:   94 INDNTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALS-TNDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPE 276          
The following BLAST results are available for this feature:
BLAST of CX288623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
FABF_RHIME1.465e-3241.443-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Rhi... [more]
KASM_ARATH8.887e-3038.713-oxoacyl-[acyl-carrier-protein] synthase, mitocho... [more]
FABF_STAAW4.876e-2840.223-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]
FABF_STAAU4.876e-2840.223-oxoacyl-[acyl-carrier-protein] synthase 2 (Fragm... [more]
FABF_STAAS4.876e-2840.223-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]
FABF_STAAR4.876e-2840.223-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]
FABF_STAAC4.876e-2840.223-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]
OXSM_BOVIN1.086e-2736.263-oxoacyl-[acyl-carrier-protein] synthase, mitocho... [more]
FABF_STAAN1.086e-2739.673-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]
FABF_STAAM1.086e-2739.673-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]

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Properties
Property NameValue
Genbank descriptionC02002E06SK IF1 Citrus clementina cDNA clone C02002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288623 ID=CX288623; Name=CX288623; organism=Citrus clementina; type=EST; length=560bp
AGAAGATGTCATGAATGAGTTAGATAAATCTAAATGTGGAGTTTTGATTG
GCTCCGGATTGGGTGGCATGAAGGTTTTTTATGATGCAATTGAGGCTTTA
AGGATCTCCTACAAGAAGATGAATCCTTTTTGCGTACCTTTTGCTACTAC
AAATATGGGTTCTGCTATGCTTGCAATGGATCTGGGATGGATGGGCCCAA
ACTATTCAATATCTACTGCTTGTGCTACAAGTAACTTCTGTATACTGAAT
GCGGCAAACCATATTATTAGAGGCGAAGCTAATTTGATGCTTTGCGGTGG
CTCAAATGCTGCTGTTATACCCATTGGGTTGGGAGGTTTTGTGGCATGCA
GAGCACTTTCACAGAGGAACAACGATCCTACCAAAGCTTCTCGCCCTTGG
GATATTAATCGTGATGGATTTGTCATGGGGGAAGGAGCTGGCGTTCTGCT
TTTAGAAGAATTAGAGCATGCTAAGAAAAGAGGTGCAAAAATCTATGCAG
AATTTCGTGGTGGAAGCTTCACCTCTGATGCTTATCATATGACTGAACCA
CACCCTGATG
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