CX288623

Overview
NameCX288623
Unique NameCX288623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABF_BACSU (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis GN=fabF PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.128e-27
Identity = 72/177 (40.68%), Postives = 97/177 (54.80%), Query Frame = 2
Query:   32 KCGVLIGSGLGGMKVFYDAIEA-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            + GV +GSG+GG++      E  L    ++++PF VP    +M +  +++ LG  G N    TACAT    I +A   I RG+A++M+ GG+ A +  +   GF A +ALS  N DP  ASRP+D NRDGFVM             HA  RGAKIY E  G   T DAYH+T P  D
Sbjct:  100 RVGVWVGSGIGGLETLESQFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVTACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSFAGFSANKALST-NPDPKTASRPFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQD 275          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: OXSM_MOUSE (3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Mus musculus GN=Oxsm PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.391e-27
Identity = 67/182 (36.81%), Postives = 99/182 (54.40%), Query Frame = 2
Query:   17 ELDKSKCGVLIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            E D+   GV IG G+  ++V  +     +   Y K++PF VP    NM +  +++     GPN+S+STAC T    + ++   I  G+A++M+ GG+++ + P+ L GF   RALS  N DP  A RP+   RDGFVM             HA +RGA+IYAE  G   + DA H+T P P+
Sbjct:  140 EADQVATGVAIGMGMVPLEVISETALLFQTKGYNKVSPFFVPKILINMAAGQVSIRYKLKGPNHSVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSS-NPDPKLACRPFHPERDGFVMGEGAAVLVLEEHEHAVQRGARIYAEILGYGLSGDAGHITAPDPE 320          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: OXSM_HUMAN (3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Homo sapiens GN=OXSM PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.495e-26
Identity = 66/183 (36.07%), Postives = 101/183 (55.19%), Query Frame = 2
Query:   14 NELDKSKCGVLIGSGLGGMKVFYD-AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            +E D+   GV IG G+  ++V  + A+      Y K++PF VP    NM +  +++     GPN+++STAC T    + ++   I  G+A++M+ GG+++ + P+ L GF   RALS  N+DP  A RP+   RDGFVM             HA +R A+IYAE  G   + DA H+T P P+
Sbjct:  139 SEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALS-TNSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPE 320          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: OXSM_SCHPO (Putative 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC887.13c PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.918e-24
Identity = 64/185 (34.59%), Postives = 100/185 (54.05%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            ++E +K   GV  G+G+G +    +    L +   +K++P  +     NM +  ++   G+   N++ +TACA     I +A N I  G A++++ GGS + + P+ + GF   R+LS + ND P  ASRP+D NRDGFV+             HAK R A IYAE  G    SD+YH+T P+P+
Sbjct:   99 IDEQEKLATGVCFGTGIGNLDDALNENGVLNKAGIRKVSPRVISKILINMPAGYISQRYGFTALNHTTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKARSLSTKFNDNPKAASRPFDANRDGFVIGEGSAALVLEELEHAKNRNAHIYAEIVGYGLASDSYHITAPNPN 283          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FAB1_MYCLE (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Mycobacterium leprae GN=kasA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.504e-24
Identity = 62/182 (34.07%), Postives = 95/182 (52.20%), Query Frame = 2
Query:   17 ELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            E+D  +  V++G+GLGG +   ++ + +     +K++P  V     N  +A + + LG      +  +AC++ +  I +A   II G+A++ +CGG    +  + +  F   RA+S RN+DP  ASRP+D NRDGFV              HAK RGAK  A   G   TSDA+HM  P  D
Sbjct:  102 EVDPDRFTVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAATVGLQLGACAGVMTPVSACSSGSEAIAHAWRQIIMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDDPEGASRPFDKNRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAAD 283          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FAB1_MYCTU (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Mycobacterium tuberculosis GN=kasA PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24
Identity = 59/182 (32.42%), Postives = 97/182 (53.30%), Query Frame = 2
Query:   17 ELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            E+D  +  V++G+GLGG +   ++ + +     +K++P  V     N  +A++ + LG      +  +AC++ +  I +A   I+ G+A++ +CGG    +  + +  F   RA+S RN++P +ASRP+D +RDGFV              HAK RGAK  A   G   TSDA+HM  P  D
Sbjct:  102 EVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAAD 283          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FAB1_MYCBO (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Mycobacterium bovis GN=kasA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24
Identity = 59/182 (32.42%), Postives = 97/182 (53.30%), Query Frame = 2
Query:   17 ELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            E+D  +  V++G+GLGG +   ++ + +     +K++P  V     N  +A++ + LG      +  +AC++ +  I +A   I+ G+A++ +CGG    +  + +  F   RA+S RN++P +ASRP+D +RDGFV              HAK RGAK  A   G   TSDA+HM  P  D
Sbjct:  102 EVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAAD 283          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: CEM1_YEAST (3-oxoacyl-[acyl-carrier-protein] synthase homolog OS=Saccharomyces cerevisiae GN=CEM1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.795e-22
Identity = 59/174 (33.91%), Postives = 90/174 (51.72%), Query Frame = 2
Query:   38 GVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            G LIGSG+G ++  Y          K++NP+ VP   TNM +  +++     G ++S+STACAT N  I +A N I  G  ++ + G S  ++ P+ L GF+  ++++         SRP+D  R GFV+             HA+KR A I +E  G   +SDA H+T P  D
Sbjct:  126 GCLIGSGIGSIQDIYQTSLQFHNDNKRINPYFVPKILTNMAAGNVSIKFNLRGLSHSVSTACATGNNSIGDAFNFIRLGMQDICVAGASETSLHPLSLAGFIRAKSITTNG-----ISRPFDTQRSGFVLGEGCGMIVMESLEHAQKRNANIISELVGYGLSSDACHITSPPAD 294          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FAB2_MYCTU (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Mycobacterium tuberculosis GN=kasB PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.089e-19
Identity = 59/183 (32.24%), Postives = 88/183 (48.09%), Query Frame = 2
Query:   17 ELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACR-ALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            E+D ++  V IG+GLG  +    + + +R    K ++P  V     N  +A + ++        +  +ACA+    I  A   I+ GEA+  +CGG    +  + + GF   R  +S  N+DP  A RP+D +RDGFV              HAK RGA I A   G S TSD +HM  P P+
Sbjct:  101 EVDTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPN 283          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FAB2_MYCBO (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Mycobacterium bovis GN=kasB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.089e-19
Identity = 59/183 (32.24%), Postives = 88/183 (48.09%), Query Frame = 2
Query:   17 ELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACR-ALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            E+D ++  V IG+GLG  +    + + +R    K ++P  V     N  +A + ++        +  +ACA+    I  A   I+ GEA+  +CGG    +  + + GF   R  +S  N+DP  A RP+D +RDGFV              HAK RGA I A   G S TSD +HM  P P+
Sbjct:  101 EVDTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPN 283          
The following BLAST results are available for this feature:
BLAST of CX288623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
FABF_BACSU4.128e-2740.683-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bac... [more]
OXSM_MOUSE5.391e-2736.813-oxoacyl-[acyl-carrier-protein] synthase, mitocho... [more]
OXSM_HUMAN3.495e-2636.073-oxoacyl-[acyl-carrier-protein] synthase, mitocho... [more]
OXSM_SCHPO1.918e-2434.59Putative 3-oxoacyl-[acyl-carrier-protein] synthase... [more]
FAB1_MYCLE2.504e-2434.073-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Myc... [more]
FAB1_MYCTU3.271e-2432.423-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Myc... [more]
FAB1_MYCBO3.271e-2432.423-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Myc... [more]
CEM1_YEAST1.795e-2233.913-oxoacyl-[acyl-carrier-protein] synthase homolog ... [more]
FAB2_MYCTU1.089e-1932.243-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Myc... [more]
FAB2_MYCBO1.089e-1932.243-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Myc... [more]

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Properties
Property NameValue
Genbank descriptionC02002E06SK IF1 Citrus clementina cDNA clone C02002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288623 ID=CX288623; Name=CX288623; organism=Citrus clementina; type=EST; length=560bp
AGAAGATGTCATGAATGAGTTAGATAAATCTAAATGTGGAGTTTTGATTG
GCTCCGGATTGGGTGGCATGAAGGTTTTTTATGATGCAATTGAGGCTTTA
AGGATCTCCTACAAGAAGATGAATCCTTTTTGCGTACCTTTTGCTACTAC
AAATATGGGTTCTGCTATGCTTGCAATGGATCTGGGATGGATGGGCCCAA
ACTATTCAATATCTACTGCTTGTGCTACAAGTAACTTCTGTATACTGAAT
GCGGCAAACCATATTATTAGAGGCGAAGCTAATTTGATGCTTTGCGGTGG
CTCAAATGCTGCTGTTATACCCATTGGGTTGGGAGGTTTTGTGGCATGCA
GAGCACTTTCACAGAGGAACAACGATCCTACCAAAGCTTCTCGCCCTTGG
GATATTAATCGTGATGGATTTGTCATGGGGGAAGGAGCTGGCGTTCTGCT
TTTAGAAGAATTAGAGCATGCTAAGAAAAGAGGTGCAAAAATCTATGCAG
AATTTCGTGGTGGAAGCTTCACCTCTGATGCTTATCATATGACTGAACCA
CACCCTGATG
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