CX288623

Overview
NameCX288623
Unique NameCX288623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABB_HAEIN (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Haemophilus influenzae GN=fabB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.168e-19
Identity = 66/182 (36.26%), Postives = 91/182 (50.00%), Query Frame = 2
Query:   14 NELDKSKCGVLIGSGLGGMKVFYDAIEALR--ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            +++   + G++IG+G G       A +A+R     K + P+ V     +  SA LA      G NYS+S+ACATS  CI +A   I  G+ +++  GG+           F A  A+S + N+ P KASR +D NRDGFV+             HA  RGAKIYAE  G   TSD Y M  P
Sbjct:   91 DQVSNDRTGLVIGAGTGSAHNQLVACDAVRGPRGVKAIGPYAVTKTMASSVSACLATPYKIRGVNYSMSSACATSAHCIGHAVELIQLGKQDVVFAGGAEELSWECATE-FDAMGAVSTKYNETPEKASRAYDANRDGFVIAGGGAVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP 271          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABB_ECOLI (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Escherichia coli (strain K12) GN=fabB PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.204e-18
Identity = 67/176 (38.07%), Postives = 86/176 (48.86%), Query Frame = 2
Query:   32 KCGVLIGSGLGGMKVFYDAIEALR--ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            + G++ GSG G  +      +A+R     K + P+ V  A  +  SA LA      G NYSIS+ACATS  CI NA   I  G+ +++  GG       +    F A  ALS + ND P KASR +D +RDGFV+             HA  RGA IYAE  G   TSD   M  P
Sbjct:   98 RVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 272          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABB_ECOL6 (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Escherichia coli O6 GN=fabB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.204e-18
Identity = 67/176 (38.07%), Postives = 86/176 (48.86%), Query Frame = 2
Query:   32 KCGVLIGSGLGGMKVFYDAIEALR--ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            + G++ GSG G  +      +A+R     K + P+ V  A  +  SA LA      G NYSIS+ACATS  CI NA   I  G+ +++  GG       +    F A  ALS + ND P KASR +D +RDGFV+             HA  RGA IYAE  G   TSD   M  P
Sbjct:   98 RVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 272          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABB_BUCAP (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=fabB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 66/179 (36.87%), Postives = 89/179 (49.72%), Query Frame = 2
Query:   32 KCGVLIGSGLGGMKVFYDAIEALRIS--YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            + G++ GSG G  K     I+A+R +     ++P+    A  +  SA L+      G NYSIS+ACATS  CI NA   I  G+ +L+  GG       +    F A +ALS   N +PTK+SR +D+NRDGFV+              A  R A IYAE  G + TSD   M  P  D
Sbjct:   99 RIGIIAGSGGGFPKYHIQGIDAIRSNRGLNSVSPYIAIKAMNSGISACLSTLFKIYGVNYSISSACATSGHCIGNAFELIKFGKQDLIFAGGGEEVSWELAY-EFDAMKALSSNFNKNPTKSSRVYDVNRDGFVISGGGGIIVIEELNCALSRSAHIYAEIIGYAATSDGKDMVVPSGD 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: KAS1_STRGA (Tetracenomycin C polyketide putative beta-ketoacyl synthase 1 OS=Streptomyces glaucescens GN=tcmK PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.803e-18
Identity = 52/131 (39.69%), Postives = 74/131 (56.49%), Query Frame = 2
Query:  170 LAMDLGWMGPNYSISTACATSNFCILNAANHIIR-GEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            +A + G  GP   +ST C TS    +     +IR G A++++CG ++A + PI +  F A +A S  N+DP  ASRP+D NRDGFV+              A++RGA  YAE RG +  S+A+HMT   PD
Sbjct:  156 VAWEAGAEGPVTVVSTGC-TSGLDAVGYGTELIRDGRADVVVCGATDAPISPITVACFDAIKATSANNDDPAHASRPFDRNRDGFVLGEGSAVFVLEELSAARRRGAHAYAEVRGFATRSNAFHMTGLKPD 285          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FAB2_MYCLE (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Mycobacterium leprae GN=kasB PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17
Identity = 56/183 (30.60%), Postives = 89/183 (48.63%), Query Frame = 2
Query:   17 ELDKSKCGVLIGSGLGGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACR-ALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            E+D ++  V IG+GLG  +    + + +R    K ++P  V     N  +A + ++        +  +ACA+ +  I +A   I+ GEA+  +CGG    +  + + GF   R  +S +N++P  A RP+D +RDGFV               AK R A I A   G S TSD +HM  P P+
Sbjct:  104 EVDTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLAVQKYMPNGAAAAVGLEHHAKAGVMTPVSACASGSEAIAHAWQQIVLGEADSAICGGVETKIEAVPIAGFSQMRIVMSTKNDNPAGACRPFDRDRDGFVFGEAGALMLIETEDSAKARSANILARIMGASITSDGFHMVAPDPN 286          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: KAS1_STRCO (Putative polyketide beta-ketoacyl synthase 1 OS=Streptomyces coelicolor GN=SCO5318 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.738e-17
Identity = 54/185 (29.19%), Postives = 90/185 (48.65%), Query Frame = 2
Query:   11 MNELDKSKCGVLIGSGLGGM-KVFYDAIEALR------ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMT 544
            MN  D  + G  +G+ +GG  ++ +D +          +  ++  P      T    S+ +A + G  GP  ++ST C +    +  A + +  G  ++ L G +++ + PI +  F A +A S  N+DP  ASRP+D +R+GFVM             HA+ RGA +Y E  G +   +AYHMT
Sbjct:   93 MNREDPWRAGATLGTAVGGTTRLEHDYVLVSERGSRWDVDDRRSEPHLERAFTPATLSSAVAEEFGVRGPVQTVSTGCTSGLDAVGYAYHAVAEGRVDVCLAGAADSPISPITMACFDAIKATSPNNDDPAHASRPFDADRNGFVMGEGAAVLVLEDLEHARARGADVYCEVSGYATFGNAYHMT 277          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: KAS1_STRRM (Oxytetracycline polyketide putative beta-ketoacyl synthase 1 OS=Streptomyces rimosus PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.628e-17
Identity = 57/187 (30.48%), Postives = 94/187 (50.27%), Query Frame = 2
Query:    8 VMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKM----NPFCVPFATTNMGSAMLAMDLGWM----GPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMT 544
            V  E D  + GV+ G+  G M +  D   A+     ++    +   VP+       + +A ++ W+    GP   +S  C +    + +AA+ +  G A +M+ G S+AA+ PI +  F A +A + RN++P  ASRP+D  R+GFV+             HA++RGA+ YAE  G +   +AY MT
Sbjct:   95 VTGEADPLRTGVMAGTACG-MTMSLDREYAVVSDEGRLWQVDDAHGVPYLYDYFVPSSMAAEIAWLAEAEGPAGVVSAGCTSGIDVLTHAADLVRDGAAEVMVAGASDAAISPITVACFDAIKATTPRNDEPETASRPFDRTRNGFVLGEGAAFFVLEEYAHARRRGARAYAEIAGYAGRCNAYSMT 280          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: KAS1_STRCN (Putative polyketide beta-ketoacyl synthase 1 OS=Streptomyces cyaneus GN=curA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.127e-16
Identity = 47/128 (36.72%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  161 SAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMT 544
            +A +A   G  GP  ++ST C +    +  A + I  G A++ + G S++ + PI +  F A +A S  N+DP  ASRP+D +RDGFVM             HA+ RGA +Y E  G +   +AYHMT
Sbjct:  149 AADVAERFGAQGPVQTVSTGCTSGLDAVGYAFHTIEEGRADVCIAGASDSPISPITMACFDAIKATSPNNDDPEHASRPFDAHRDGFVMGEGAAVLVLEELEHARARGAHVYCEIGGYATFGNAYHMT 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: KAS1_STRHA (Putative polyketide beta-ketoacyl synthase 1 OS=Streptomyces halstedii GN=sch1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 55/182 (30.22%), Postives = 91/182 (50.00%), Query Frame = 2
Query:   23 DKSKCGVLIGSGLGGM-KVFYDAIEALR------ISYKKMNPFCV-PFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMT 544
            D  + G ++G+ +GG  ++ +D +          + +++  P     FA + + S + A   G  GP  ++ST C +    +  A + I  G A++ L G S++ + PI +  F A +A S  N+DP  ASRP+D  R+GFVM             HA+ RGA +Y E  G +   +A+HMT
Sbjct:   96 DPWRMGAVLGTAVGGTTRLEHDYVLVSEGGSRWDVDHRRAEPHLHRAFAPSTLASTV-AETFGAQGPVQTVSTGCTSGLDAVGYAYHAIAEGRADVCLAGASDSPISPITMACFDAIKATSPSNDDPEHASRPFDARRNGFVMGEGGAVLVLEELEHARARGADVYCELAGYATFGNAHHMT 276          
The following BLAST results are available for this feature:
BLAST of CX288623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
FABB_HAEIN3.168e-1936.263-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Hae... [more]
FABB_ECOLI1.204e-1838.073-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Esc... [more]
FABB_ECOL61.204e-1838.073-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Esc... [more]
FABB_BUCAP3.503e-1836.873-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buc... [more]
KAS1_STRGA7.803e-1839.69Tetracenomycin C polyketide putative beta-ketoacyl... [more]
FAB2_MYCLE1.019e-1730.603-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Myc... [more]
KAS1_STRCO1.738e-1729.19Putative polyketide beta-ketoacyl synthase 1 OS=St... [more]
KAS1_STRRM8.628e-1730.48Oxytetracycline polyketide putative beta-ketoacyl ... [more]
KAS1_STRCN1.127e-1636.72Putative polyketide beta-ketoacyl synthase 1 OS=St... [more]
KAS1_STRHA1.472e-1630.22Putative polyketide beta-ketoacyl synthase 1 OS=St... [more]

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Properties
Property NameValue
Genbank descriptionC02002E06SK IF1 Citrus clementina cDNA clone C02002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288623 ID=CX288623; Name=CX288623; organism=Citrus clementina; type=EST; length=560bp
AGAAGATGTCATGAATGAGTTAGATAAATCTAAATGTGGAGTTTTGATTG
GCTCCGGATTGGGTGGCATGAAGGTTTTTTATGATGCAATTGAGGCTTTA
AGGATCTCCTACAAGAAGATGAATCCTTTTTGCGTACCTTTTGCTACTAC
AAATATGGGTTCTGCTATGCTTGCAATGGATCTGGGATGGATGGGCCCAA
ACTATTCAATATCTACTGCTTGTGCTACAAGTAACTTCTGTATACTGAAT
GCGGCAAACCATATTATTAGAGGCGAAGCTAATTTGATGCTTTGCGGTGG
CTCAAATGCTGCTGTTATACCCATTGGGTTGGGAGGTTTTGTGGCATGCA
GAGCACTTTCACAGAGGAACAACGATCCTACCAAAGCTTCTCGCCCTTGG
GATATTAATCGTGATGGATTTGTCATGGGGGAAGGAGCTGGCGTTCTGCT
TTTAGAAGAATTAGAGCATGCTAAGAAAAGAGGTGCAAAAATCTATGCAG
AATTTCGTGGTGGAAGCTTCACCTCTGATGCTTATCATATGACTGAACCA
CACCCTGATG
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