CX288623

Overview
NameCX288623
Unique NameCX288623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: NOE4_RHIME (Nodulation protein E OS=Rhizobium meliloti GN=nodE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 55/179 (30.73%), Postives = 86/179 (48.04%), Query Frame = 2
Query:   14 NELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            NE +  + G  +G GLGG      A      +  +   F    A  +  +  ++M LG  GP + +++AC+++N  I +A + I  G A++ML GGS+A ++ I L  + A RAL+          RP+   R G V+             HA  RGA I AE  G   ++DA+H+T P
Sbjct:   92 NEGNALRFGATVGVGLGGWDATEKAYRPSLSTGGRTEIFTGVKAMPSAAACQVSMSLGLRGPVFGVTSACSSANHAIASAVDQIKCGRADVMLAGGSDAPLVWIVLKAWEAMRALA------PDTCRPFSAGRKGVVLGEGAGMAVLESYEHATARGATILAEVAGVGLSADAFHITAP 264          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: NODE_RHIME (Nodulation protein E OS=Rhizobium meliloti GN=nodE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 56/180 (31.11%), Postives = 87/180 (48.33%), Query Frame = 2
Query:   14 NELDKSKCGVLIGSGLGGMKVFYDAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            NE +  + G  +G GLGG      A   L +    +   F    A  +  +  ++M LG  GP + +++AC+++N  I +A + I  G A++ML GGS+A ++ I L  + A RAL+          RP+   R G V+             HA  RGA I AE  G   ++DA+H+T P
Sbjct:   92 NEGNALRFGATVGVGLGGWDATEKAYRTLLVDGGTRTEIFTGVKAMPSAAACQVSMSLGLRGPVFGVTSACSSANHAIASAVDQIKCGRADVMLAGGSDAPLVWIVLKAWEAMRALA------PDTCRPFSAGRKGVVLGEGAGMAVLESYEHATARGATILAEVAGVGLSADAFHITAP 265          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: KASA_STRCO (Actinorhodin polyketide putative beta-ketoacyl synthase 1 OS=Streptomyces coelicolor GN=SCO5087 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 55/182 (30.22%), Postives = 86/182 (47.25%), Query Frame = 2
Query:   20 LDKSKCGVLIGSGLGGMK-------VFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMT 544
            LD ++ GV +GS +           +  D+     +    ++     +   ++  A +A  +G  GP   +ST C +    + NA   I  G A++M  G ++  + PI +  F A RA + RN+DP  ASRP+D  RDGFV+              A  RGA+I+AE  G +   +AYHMT
Sbjct:  138 LDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMT 319          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: KAS1_STRVN (Granaticin polyketide putative beta-ketoacyl synthase 1 OS=Streptomyces violaceoruber GN=gra-orf1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.246e-15
Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 2
Query:   20 LDKSKCGVLIGSGLGGMK-------VFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMT 544
            LD S+ GV +GS +           V  D+     +    ++P    + +  +  A +A   G  GP   +S  C +    +  A      G A++++ G ++  V PI +  F A +A + RN+DP  ASRP+D  R+GFV+              A++RGA IYAE  G +  S AYHMT
Sbjct:   95 LDPSRIGVALGSAVASATSLENEYLVMSDSGREWLVDPAHLSPMMFDYLSPGVMPAEVAWAAGAEGPVTMVSDGCTSGLDSVGYAVQGTREGSADVVVAGAADTPVSPIVVACFDAIKATTPRNDDPAHASRPFDGTRNGFVLAEGAAMFVLEEYEAAQRRGAHIYAEVGGYATRSQAYHMT 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: NODE_RHILV (Nodulation protein E OS=Rhizobium leguminosarum bv. viciae GN=nodE PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.625e-15
Identity = 54/180 (30.00%), Postives = 85/180 (47.22%), Query Frame = 2
Query:   14 NELDKSKCGVLIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            NE +  + G  +G G GG      A   L +    +   F    A  +  +  ++M+LG  GP +  ++ACA++N  I +A + I  G A++ML GGS+A ++ I L  + A R L+          RP+  +R G V+             HA  RGA + AE  G   ++DAYH+  P
Sbjct:   92 NEGNAHRFGATVGVGFGGWDATEKAYRTLLLGGATRTELFTGVKAMPSAAACQVSMNLGLRGPVFGATSACASANHAIASAVDQIKLGRADVMLAGGSDAPLVWIVLKAWEAMRVLA------PDTCRPFSADRKGLVLGEGAGMAVLESYEHAAARGATMLAEVAGIGLSADAYHIAAP 265          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABB_BUCBP (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=fabB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.734e-15
Identity = 59/176 (33.52%), Postives = 87/176 (49.43%), Query Frame = 2
Query:   32 KCGVLIGSGLGGMKVFYDAIEALRIS--YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALS-QRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            + GV+IGS  G  +   + +  ++ +   K ++P+ V  + T+  SA L+      G NYSIS+ACATS  CI NA   I  G+ +L+  GG       +    F +  ALS   N+ P  +SR +D  RDGFV+             +A  R A IYAE  G   +SD Y++  P
Sbjct:   99 RVGVIIGSSSGSPRCQINGVSIIKKTKRLKSVSPYTVIKSMTSSISACLSTLFKIQGVNYSISSACATSAHCIGNAMELIQLGKQDLIFAGGGEELSWELAC-AFDSMGALSTMYNSQPILSSRVFDYYRDGFVISGGAGILVVEELNYALSRSAHIYAEIVGYGTSSDGYNVVVP 273          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: FABB_BUCAI (3-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fabB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 63/180 (35.00%), Postives = 86/180 (47.78%), Query Frame = 2
Query:   32 KCGVLIGSGLGGMK-VFYDAIEALRISY--KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 559
            + G++ GSG    K      I  ++  +  K ++P+       +  SA L+      G  YSIS+ACATS  CI NA   I  G  +L+  GG     + + +  F A RALS   NNDP KASR +D+ RDGFV+              A  R A IYAE  G + TSD  ++  P  D
Sbjct:   98 RVGLISGSGCSFSKNTLTSDIHLMKNKHISKGISPYLAVKTMPSGISACLSTLFKIYGVTYSISSACATSAHCIGNAFELIQFGRQDLIFAGGGEEISLELAMQ-FDAMRALSTCFNNDPKKASRVYDVYRDGFVISGGAGMLVIEELNSALSRSAYIYAEIIGYAATSDGSNIVVPSGD 276          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: NODE_RHIS3 (Nodulation protein E OS=Rhizobium sp. (strain N33) GN=nodE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14
Identity = 49/180 (27.22%), Postives = 88/180 (48.89%), Query Frame = 2
Query:   14 NELDKSKCGVLIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEP 550
            +E +  + G ++G G  G +    +  AL ++  ++     VP A  +  +  ++M LG  GP + +++ACA++N  I +A + I  G A++ML GGS+A  +   +  + A R ++          RP+  +R G V+             HA  RGA I AE  G   ++DA+++  P
Sbjct:   92 DERNAYRFGAIVGVGGSGWEAIEASYRALLLNGARRAGVMDVPKAMPSAAAGQVSMSLGLRGPVFGVTSACASANHAIASAVDQIRCGRADVMLAGGSDAPFVFCVVKAWEAMRVIA------PDTCRPFSSDRRGLVLGEGAGMAVLESYEHATARGATIIAEIAGIGLSADAFNLVSP 265          
BLAST of CX288623 vs. ExPASy Swiss-Prot
Match: KAS1_STRCM (Putative polyketide beta-ketoacyl synthase 1 OS=Streptomyces cinnamonensis PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.523e-13
Identity = 51/178 (28.65%), Postives = 85/178 (47.75%), Query Frame = 2
Query:   32 KCGVLIGSGLGGM-------KVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANLMLCGGSNAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMT 544
            + GV++GS +G         +V  D      + ++   P    +   +  +A +A  +G  GP+  +ST C +    +  A   +  G  ++M+ G  +A + PI      A +A + R++ P  ASRP+D  R+GFV+              A++RGA IYAE  G +  S+AYHMT
Sbjct:   99 RIGVVVGSAVGATMGLDNEYRVVSDGGRLDLVDHRYAVPHLYNYLVPSSFAAEVAWAVGAEGPSTVVSTGCTSGIDAVGIAVELVREGSVDVMVAGAVDAPISPIPCV-LDAIKATTPRHDAPATASRPFDSTRNGFVLGEGAAFFVLEELHSARRRGAHIYAEIAGYATRSNAYHMT 275          
The following BLAST results are available for this feature:
BLAST of CX288623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
NOE4_RHIME3.278e-1630.73Nodulation protein E OS=Rhizobium meliloti GN=nodE... [more]
NODE_RHIME3.278e-1631.11Nodulation protein E OS=Rhizobium meliloti GN=nodE... [more]
KASA_STRCO3.278e-1630.22Actinorhodin polyketide putative beta-ketoacyl syn... [more]
KAS1_STRVN1.246e-1530.22Granaticin polyketide putative beta-ketoacyl synth... [more]
NODE_RHILV3.625e-1530.00Nodulation protein E OS=Rhizobium leguminosarum bv... [more]
FABB_BUCBP4.734e-1533.523-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buc... [more]
FABB_BUCAI1.799e-1435.003-oxoacyl-[acyl-carrier-protein] synthase 1 OS=Buc... [more]
NODE_RHIS36.836e-1427.22Nodulation protein E OS=Rhizobium sp. (strain N33)... [more]
KAS1_STRCM1.523e-1328.65Putative polyketide beta-ketoacyl synthase 1 OS=St... [more]

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Properties
Property NameValue
Genbank descriptionC02002E06SK IF1 Citrus clementina cDNA clone C02002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288623 ID=CX288623; Name=CX288623; organism=Citrus clementina; type=EST; length=560bp
AGAAGATGTCATGAATGAGTTAGATAAATCTAAATGTGGAGTTTTGATTG
GCTCCGGATTGGGTGGCATGAAGGTTTTTTATGATGCAATTGAGGCTTTA
AGGATCTCCTACAAGAAGATGAATCCTTTTTGCGTACCTTTTGCTACTAC
AAATATGGGTTCTGCTATGCTTGCAATGGATCTGGGATGGATGGGCCCAA
ACTATTCAATATCTACTGCTTGTGCTACAAGTAACTTCTGTATACTGAAT
GCGGCAAACCATATTATTAGAGGCGAAGCTAATTTGATGCTTTGCGGTGG
CTCAAATGCTGCTGTTATACCCATTGGGTTGGGAGGTTTTGTGGCATGCA
GAGCACTTTCACAGAGGAACAACGATCCTACCAAAGCTTCTCGCCCTTGG
GATATTAATCGTGATGGATTTGTCATGGGGGAAGGAGCTGGCGTTCTGCT
TTTAGAAGAATTAGAGCATGCTAAGAAAAGAGGTGCAAAAATCTATGCAG
AATTTCGTGGTGGAAGCTTCACCTCTGATGCTTATCATATGACTGAACCA
CACCCTGATG
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