CX288707
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3) HSP 1 Score: 126.716 bits (317), Expect = 7.028e-29 Identity = 70/181 (38.67%), Postives = 105/181 (58.01%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LN FPLPR ++ + + NAQIF+ DL SG+ Q+ ++P +RYKTAF P+ Y++TV+PFGL APS F + M F L +Y+D+IL+FS S EH + L + +++ +++ KK A++ EFLG I P +H + FP + + KQ Q+FLG+INY Sbjct: 655 LNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRD-LRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPK-TVKQAQRFLGMINY 833
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CERV (Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.566e-28 Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 1 Query: 34 LPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIF-HPILHHALIYIDNILLFSGS-HAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LP + T ++ +I+S FD KSG WQ+ + + TAF P HYQW V+PFGLK APSIF K+ + + +Y+D+IL+FS + EH+ + + GI+LS KK+ + + I FLG+ I + P HI + + FPD+ KKQ+Q+FLGI+ Y Sbjct: 302 LPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTY 473
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_SOCMV (Enzymatic polyprotein OS=Soybean chlorotic mottle virus GN=ORF V PE=3 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27 Identity = 68/175 (38.86%), Postives = 103/175 (58.86%), Query Frame = 1 Query: 28 FPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAF-CIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFS-GSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIK-DDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 + LPR + +K + FS D KSG++QL + + + TAF C P HY+W VL FGLK APSI+Q+ M + + H L YID+IL+F+ GS +H + ++ GI++S KKS + IE+LG+ I+ + H +++L FPD+ +KQ+Q+FLG INY Sbjct: 275 YKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKGLEHICLAYIDDILIFTKGSKEQHVNDVRIVLQRIKEKGIIISKKKSKLIQQEIEYLGLKIQGNGEIDLSPHTQEKILQFPDELEDRKQIQRFLGCINY 449
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_COYMV (Putative polyprotein OS=Commelina yellow mottle virus PE=4 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27 Identity = 64/182 (35.16%), Postives = 106/182 (58.24%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQ-VQQFLGIINY 543 LN + ++ LP ++ + + ++I+SKFDLKSGFWQ+ ++ TAF N Y+W V+PFGLK AP+IFQ+ M +F +YID+IL+FS + +H Q L + + +G++LS K I T I+FLG + + HI ++ F D++L+ + ++ +LGI++Y Sbjct: 1472 LNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKGTEKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSY 1653
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_RTBVP (Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines) PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 6.157e-25 Identity = 67/182 (36.81%), Postives = 100/182 (54.95%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSK-KQVQQFLGIINY 543 LN + F +P SM ++ A IFSKFDLK+GF + +K + T F Y W V PFG+ AP FQ+ M + F L AL+YID+IL+ S + EH + L F++ V+ G +LS KKS + +E+LG+ IK+ HI ++ F +L+ K +Q +LG++NY Sbjct: 1248 LNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGD-LKFALLYIDDILIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLNY 1428
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20 Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILH-HALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LN + P+P + L F+ DL GF Q+ + P KTAF + HY++ +PFGLK AP+ FQ+ M I P+L+ H L+Y+D+I++FS S EH Q L ++ + + L K FLG ++ D +P + + +P K+++ FLG+ Y Sbjct: 271 LNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYP-IPTKPKEIKAFLGLTGY 451
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20 Identity = 54/182 (29.67%), Postives = 89/182 (48.90%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILH-HALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LN ++P+P + L Q F+ DL GF Q+ + KTAF + HY++ +PFGL+ AP+ FQ+ M I P+L+ H L+Y+D+I++FS S EH + + + + L K FLG I+ D +P + ++ +P K+++ FLG+ Y Sbjct: 270 LNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYP-IPTKDKEIRAFLGLTGY 450
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19 Identity = 48/182 (26.37%), Postives = 102/182 (56.04%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILH-HALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LN +++ + +PLP + + ++ + IF+K DLKS + + ++ + +K AF P +++ V+P+G+ AP+ FQ + I + H + Y+DNIL+ S S +EH + + +++ ++++ K ++F+G I + + P + ++L + Q ++K+++QFLG +NY Sbjct: 471 LNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW-KQPKNRKELRQFLGSVNY 651
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19 Identity = 48/182 (26.37%), Postives = 102/182 (56.04%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILH-HALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LN +++ + +PLP + + ++ + IF+K DLKS + + ++ + +K AF P +++ V+P+G+ AP+ FQ + I + H + Y+DNIL+ S S +EH + + +++ ++++ K ++F+G I + + P + ++L + Q ++K+++QFLG +NY Sbjct: 471 LNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW-KQPKNRKELRQFLGSVNY 651
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18 Identity = 48/182 (26.37%), Postives = 102/182 (56.04%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILH-HALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LN +++ + +PLP + + ++ + IF+K DLKS + + ++ + +K AF P +++ V+P+G+ TAP+ FQ + I H + Y+D+IL+ S S +EH + + +++ ++++ K ++F+G I + + P + ++L + Q ++K+++QFLG +NY Sbjct: 471 LNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW-KQPKNRKELRQFLGSVNY 651 The following BLAST results are available for this feature:
BLAST of CX288707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288707 ID=CX288707; Name=CX288707; organism=Citrus clementina; type=EST; length=544bpback to top |