CX288707

Overview
NameCX288707
Unique NameCX288707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 7.028e-29
Identity = 70/181 (38.67%), Postives = 105/181 (58.01%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LN       FPLPR  ++ + + NAQIF+  DL SG+ Q+ ++P +RYKTAF  P+  Y++TV+PFGL  APS F + M   F   L    +Y+D+IL+FS S  EH + L    + +++  +++  KK   A++  EFLG  I      P +H    +  FP  + + KQ Q+FLG+INY
Sbjct:  655 LNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRD-LRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPK-TVKQAQRFLGMINY 833          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CERV (Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.566e-28
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 1
Query:   34 LPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIF-HPILHHALIYIDNILLFSGS-HAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LP    + T ++  +I+S FD KSG WQ+ +    +  TAF  P  HYQW V+PFGLK APSIF K+      +    +  +Y+D+IL+FS +   EH+  +       +  GI+LS KK+ +  + I FLG+ I    + P  HI + +  FPD+   KKQ+Q+FLGI+ Y
Sbjct:  302 LPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTY 473          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_SOCMV (Enzymatic polyprotein OS=Soybean chlorotic mottle virus GN=ORF V PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27
Identity = 68/175 (38.86%), Postives = 103/175 (58.86%), Query Frame = 1
Query:   28 FPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAF-CIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFS-GSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIK-DDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            + LPR   +   +K +  FS  D KSG++QL +  + +  TAF C P  HY+W VL FGLK APSI+Q+ M +    + H  L YID+IL+F+ GS  +H   +      ++  GI++S KKS +    IE+LG+ I+ +       H  +++L FPD+   +KQ+Q+FLG INY
Sbjct:  275 YKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKGLEHICLAYIDDILIFTKGSKEQHVNDVRIVLQRIKEKGIIISKKKSKLIQQEIEYLGLKIQGNGEIDLSPHTQEKILQFPDELEDRKQIQRFLGCINY 449          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_COYMV (Putative polyprotein OS=Commelina yellow mottle virus PE=4 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27
Identity = 64/182 (35.16%), Postives = 106/182 (58.24%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQ-VQQFLGIINY 543
            LN   +  ++ LP   ++ + +  ++I+SKFDLKSGFWQ+ ++      TAF   N  Y+W V+PFGLK AP+IFQ+ M  +F        +YID+IL+FS +  +H Q L     + + +G++LS  K  I T  I+FLG  +     +   HI  ++  F D++L+  + ++ +LGI++Y
Sbjct: 1472 LNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKGTEKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSY 1653          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_RTBVP (Polyprotein P3 OS=Rice tungro bacilliform virus (isolate Philippines) PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.157e-25
Identity = 67/182 (36.81%), Postives = 100/182 (54.95%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSK-KQVQQFLGIINY 543
            LN  +    F +P   SM   ++ A IFSKFDLK+GF  + +K   +  T F      Y W V PFG+  AP  FQ+ M + F   L  AL+YID+IL+ S +  EH + L  F++ V+  G +LS KKS +    +E+LG+ IK+       HI  ++  F   +L+  K +Q +LG++NY
Sbjct: 1248 LNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGD-LKFALLYIDDILIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLNY 1428          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILH-HALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LN      + P+P    +   L     F+  DL  GF Q+ + P    KTAF   + HY++  +PFGLK AP+ FQ+ M  I  P+L+ H L+Y+D+I++FS S  EH Q L   ++ +    + L   K         FLG ++  D  +P     + +  +P      K+++ FLG+  Y
Sbjct:  271 LNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYP-IPTKPKEIKAFLGLTGY 451          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 54/182 (29.67%), Postives = 89/182 (48.90%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILH-HALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LN      ++P+P    +   L   Q F+  DL  GF Q+ +      KTAF   + HY++  +PFGL+ AP+ FQ+ M  I  P+L+ H L+Y+D+I++FS S  EH   +   +  +    + L   K         FLG I+  D  +P     + ++ +P      K+++ FLG+  Y
Sbjct:  270 LNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYP-IPTKDKEIRAFLGLTGY 450          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 48/182 (26.37%), Postives = 102/182 (56.04%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILH-HALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LN +++ + +PLP  + +   ++ + IF+K DLKS +  + ++  + +K AF  P   +++ V+P+G+  AP+ FQ  +  I   +   H + Y+DNIL+ S S +EH + +      +++  ++++  K       ++F+G  I +  + P +    ++L +  Q  ++K+++QFLG +NY
Sbjct:  471 LNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW-KQPKNRKELRQFLGSVNY 651          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 48/182 (26.37%), Postives = 102/182 (56.04%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILH-HALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LN +++ + +PLP  + +   ++ + IF+K DLKS +  + ++  + +K AF  P   +++ V+P+G+  AP+ FQ  +  I   +   H + Y+DNIL+ S S +EH + +      +++  ++++  K       ++F+G  I +  + P +    ++L +  Q  ++K+++QFLG +NY
Sbjct:  471 LNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW-KQPKNRKELRQFLGSVNY 651          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 48/182 (26.37%), Postives = 102/182 (56.04%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILH-HALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LN +++ + +PLP  + +   ++ + IF+K DLKS +  + ++  + +K AF  P   +++ V+P+G+ TAP+ FQ  +  I       H + Y+D+IL+ S S +EH + +      +++  ++++  K       ++F+G  I +  + P +    ++L +  Q  ++K+++QFLG +NY
Sbjct:  471 LNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW-KQPKNRKELRQFLGSVNY 651          
The following BLAST results are available for this feature:
BLAST of CX288707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
YG31B_YEAST7.028e-2938.67Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
POL_CERV1.566e-2838.37Enzymatic polyprotein OS=Carnation etched ring vir... [more]
POL_SOCMV2.953e-2738.86Enzymatic polyprotein OS=Soybean chlorotic mottle ... [more]
POL_COYMV6.578e-2735.16Putative polyprotein OS=Commelina yellow mottle vi... [more]
POL_RTBVP6.157e-2536.81Polyprotein P3 OS=Rice tungro bacilliform virus (i... [more]
POL3_DROME1.569e-2030.77Retrovirus-related Pol polyprotein from transposon... [more]
POL2_DROME7.789e-2029.67Retrovirus-related Pol polyprotein from transposon... [more]
RTF23_SCHPO5.048e-1926.37Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO5.048e-1926.37Retrotransposable element Tf2 155 kDa protein type... [more]
RTF21_SCHPO1.125e-1826.37Retrotransposable element Tf2 155 kDa protein type... [more]

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Properties
Property NameValue
Genbank descriptionC02003E03SK IF1 Citrus clementina cDNA clone C02003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288707 ID=CX288707; Name=CX288707; organism=Citrus clementina; type=EST; length=544bp
CTAAATATGTTTTTGCAAGATCACAAATTTCCTTTGCCCCGATGACAAAG
CATGTTTACTTTTCTAAAAAATGCCCAGATCTTTTCCAAATTTGATTTAA
AATCAGGTTTTTGGCAATTAGGCATTAAACCCTCGGAGCGTTACAAAACT
GCTTTTTGTATCCCAAATGCCCATTATCAATGGACAGTCCTTCCCTTCGG
CCTCAAAACTGCCCCATCCATTTTTCAAAAATCCATGGTCAAAATCTTTC
ACCCTATCCTGCATCATGCATTAATTTACATTGATAATATCTTGCTTTTT
TCAGGGTCACATGCTGAACATCACCAGTTGTTAACTCAATTCTATGATAT
TGTTCAAAGTCATGGAATCATGCTGTCTGCCAAGAAAAGCACCATTGCCA
CGGATACCATTGAATTCCTTGGTATGATCATAAAGGACGACCATTATCAG
CCAGGAAAGCACATTGCCCAAGAGTTGCTTCACTTTCCAGATCAGCAACT
TTCCAAAAAGCAAGTTCAACAGTTTCTAGGCATTATCAATTACA
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