CX288707
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POLG_PVCV2 (Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 3.456e-60 Identity = 110/181 (60.77%), Postives = 138/181 (76.24%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LN FLQD KFP+P ++F+ L A++FSKFDLKSGFWQLGI P+ER KT FCIP+ H+QW V+PFGLKTAPS+FQK+M+KIF PIL AL+YID+ILLFS + +H +LL QF +V+ G+MLSAKK +A + I+FLGM D + P HI+ EL FPD LS KQ+QQFLGI+NY Sbjct: 1449 LNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNY 1629
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POLG_PVCV1 (Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 3.456e-60 Identity = 110/181 (60.77%), Postives = 138/181 (76.24%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LN FLQD KFP+P ++F+ L A++FSKFDLKSGFWQLGI P+ER KT FCIP+ H+QW V+PFGLKTAPS+FQK+M+KIF PIL AL+YID+ILLFS + +H +LL QF +V+ G+MLSAKK +A + I+FLGM D + P HI+ EL FPD LS KQ+QQFLGI+NY Sbjct: 1448 LNHFLQDDKFPIPNKLTLFSHLSKAKLFSKFDLKSGFWQLGIHPNERPKTGFCIPDRHFQWKVMPFGLKTAPSLFQKAMIKIFQPILFSALVYIDDILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNY 1628
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_FMVD (Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 3.257e-34 Identity = 69/170 (40.59%), Postives = 102/170 (60.00%), Query Frame = 1 Query: 34 LPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LP Q + T L+ IFS FD KSGFWQ+ + + TAF P H+QW V+PFGLK APSIFQ+ M + ++Y+D+I++FS S +H+ + IV+ +GI+LS KK+ + + I FLG+ I + P HI + + FPD+ KK +Q+FLG++ Y Sbjct: 313 LPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNGADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVLTY 482
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CAMVS (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 4.254e-34 Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 1 Query: 28 FPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 + LP + T ++ +IFS FD KSGFWQ+ + R TAF P HY+W V+PFGLK APSIFQ+ M + F +Y+D+IL+FS + +H + HGI+LS KK+ + I FLG+ I + ++P HI + + FPD KKQ+Q+FLGI+ Y Sbjct: 318 YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTY 489
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CAMVE (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 4.254e-34 Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 1 Query: 28 FPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 + LP + T ++ +IFS FD KSGFWQ+ + R TAF P HY+W V+PFGLK APSIFQ+ M + F +Y+D+IL+FS + +H + HGI+LS KK+ + I FLG+ I + ++P HI + + FPD KKQ+Q+FLGI+ Y Sbjct: 318 YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTY 489
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CAMVC (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 4.254e-34 Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 1 Query: 28 FPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 + LP + T ++ +IFS FD KSGFWQ+ + R TAF P HY+W V+PFGLK APSIFQ+ M + F +Y+D+IL+FS + +H + HGI+LS KK+ + I FLG+ I + ++P HI + + FPD KKQ+Q+FLGI+ Y Sbjct: 318 YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTY 489
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CAMVN (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 9.477e-34 Identity = 69/172 (40.12%), Postives = 100/172 (58.14%), Query Frame = 1 Query: 28 FPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 + LP + T ++ +IFS FD KSGFWQ+ + R TAF P HY+W V+PFGLK APSIFQ+ M + F +Y+D+I++FS + +H + HGI+LS KK+ + I FLG+ I + ++P HI + + FPD KKQ+Q+FLGI+ Y Sbjct: 319 YNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTY 490
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CAMVD (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.617e-33 Identity = 69/169 (40.83%), Postives = 98/169 (57.99%), Query Frame = 1 Query: 37 PR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 P + T ++ +IFS FD KSGFWQ+ + R TAF P HY+W V+PFGLK APSIFQ+ M + F +Y+D+IL+FS + +H + HGI+LS KK+ + I FLG+ I + ++P HI + + FPD KKQ+Q+FLGI+ Y Sbjct: 316 PNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTY 484
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_CYLCV (Enzymatic polyprotein OS=Cestrum yellow leaf curling virus GN=ORF V PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30 Identity = 75/175 (42.86%), Postives = 106/175 (60.57%), Query Frame = 1 Query: 34 LPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAF-CIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHH-QLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDD---HYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LPR S+ T +K + FS D KSG+WQL + P + TAF C P HYQW VLPFGLK AP I+Q M K + + L YID+IL+F+ S E H L + + G++LS KK+ IA TI+FLG+ ++++ QP ++ ++L FPD +KQ+Q+FLG +NY Sbjct: 276 LPRIDSILTKVKGSNWFSTLDAKSGYWQLRLHPQSKPLTAFSCPPQKHYQWNVLPFGLKQAPGIYQNFMDKNLEGLENFCLAYIDDILVFTNSSREEHLSKLLVVLERCKEKGLILSKKKAIIARQTIDFLGLTLQENGEIKLQP--NVLEKLELFPDAIEDRKQLQRFLGCLNY 448
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 7.028e-29 Identity = 70/181 (38.67%), Postives = 105/181 (58.01%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LN FPLPR ++ + + NAQIF+ DL SG+ Q+ ++P +RYKTAF P+ Y++TV+PFGL APS F + M F L +Y+D+IL+FS S EH + L + +++ +++ KK A++ EFLG I P +H + FP + + KQ Q+FLG+INY Sbjct: 681 LNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRD-LRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPK-TVKQAQRFLGMINY 859 The following BLAST results are available for this feature:
BLAST of CX288707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288707 ID=CX288707; Name=CX288707; organism=Citrus clementina; type=EST; length=544bpback to top |