CX288707

Overview
NameCX288707
Unique NameCX288707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.274e-18
Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHP-ILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LN       +P+P   +    L NA+ F+  DL SGF Q+ +K S+  KTAF   N  Y++  LPFGLK AP+IFQ+ +  I    I     +YID+I++FS  +  H + L      +    + ++ +KS      +EFLG I+  D  +      + +   P    S K++++FLG+ +Y
Sbjct:  187 LNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMP-PPTSVKELKRFLGMTSY 367          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 46/174 (26.44%), Postives = 94/174 (54.02%), Query Frame = 1
Query:   25 KFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIF-HPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            ++P+P    +   L  A+ F+  DLKSG+ Q+ +   +R KT+F +    Y++  LPFGL+ A SIFQ+++  +    I     +Y+D++++FS + ++H + +      +    + +S +K+    +++E+LG I+  D  +      + +  +P+     K V+ FLG+ +Y
Sbjct:  254 RYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYK-VRSFLGLASY 426          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 54/182 (29.67%), Postives = 85/182 (46.70%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPI-LHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            +N  L   KFPLPR   +   L  A+ FS  DL SGF Q+ +    R  T+F   N  Y++T LPFGLK AP+ FQ+ M   F  I    A +Y+D++++   S     + LT+ +   + + + L  +K +     + FLG    D    P       + ++P         ++F+   NY
Sbjct:  379 INKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPH-DADSARRFVAFCNY 559          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_SFV3L (Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 48/151 (31.79%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   94 DLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHF-PDQQLSKKQVQQFLGIINY 543
            DL +GFW   I P   + TAF      Y WT LP G   +P++F   +V +   +  +  +Y+D+I +      EH + L + + ++ + G ++S KKS IA   +EFLG  I  +     +   Q+LL+  P + L  KQ+Q  LG++N+
Sbjct:  252 DLSNGFWAHSITPESYWLTAFTWLGQQYCWTRLPQGFLNSPALFTADVVDLLKEV-PNVQVYVDDIYISHDDPREHLEQLEKVFSLLLNAGYVVSLKKSEIAQHEVEFLGFNITKEGRGLTETFKQKLLNITPPRDL--KQLQSILGLLNF 399          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_FOAMV (Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 51/151 (33.77%), Postives = 76/151 (50.33%), Query Frame = 1
Query:   94 DLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHF-PDQQLSKKQVQQFLGIINY 543
            DL +GFW   I P   + TAF      Y WT LP G   +P++F   +V +   I  +  +Y+D+I L      EH Q L + + I+   G ++S KKS I   T+EFLG  I  +          +LL+  P + L  KQ+Q  LG++N+
Sbjct:  252 DLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEI-PNVQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLLNITPPKDL--KQLQSILGLLNF 399          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_FFV (Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 1
Query:   94 DLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIA---QELLHFPDQQLSKKQVQQFLGIINY 543
            DL +GFW   I P + + TAF      Y WTVLP G   +P +F   +V +   I  +  +Y+D++ +   S  EH + L   ++ ++  G ++S KKS IA   ++FLG  I ++    G+ +    +E L       + KQ+Q  LG++N+
Sbjct:  249 DLSNGFWAHPIVPEDYWITAFTWQGKQYCWTVLPQGFLNSPGLFTGDVVDLLQGI-PNVEVYVDDVYISHDSEKEHLEYLDILFNRLKEAGYIISLKKSNIANSIVDFLGFQITNE----GRGLTDTFKEKLENITAPTTLKQLQSILGLLNF 396          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: YRD6_CAEEL (Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14
Identity = 50/181 (27.62%), Postives = 91/181 (50.28%), Query Frame = 1
Query:    1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543
            LN  L+D   PLP  + +F+ LK   ++S+ DLK  + Q+ +    +           +++  + FGLK AP+ FQK M K+   +   A +Y D+I++ + S  EH ++L + ++  + +G  +SA+K   A   + FLG +  D+H +       E +        +KQ+  FLG  ++
Sbjct:  503 LNAALKDEFHPLPTSEDIFSRLKGT-VYSQIDLKDAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTGVA-VYWDDIIISASSIEEHEKILRELFERFKEYGFRVSAEKCAFAQKQVTFLGFV--DEHGRRPDSKKTEAIRSMKAPTDQKQLASFLGAADW 679          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_SFV1 (Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14
Identity = 50/151 (33.11%), Postives = 77/151 (50.99%), Query Frame = 1
Query:   94 DLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHF-PDQQLSKKQVQQFLGIINY 543
            DL +GFW   I P   + TAF      Y WT LP G   +P++F   +V +   I  +   Y+D+I +      EH + L + + I+ + G ++S KKS IA   +EFLG  I  +         Q+LL+  P + L  KQ+Q  LG++N+
Sbjct:  252 DLTNGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEI-PNVQAYVDDIYISHDDPQEHLEQLEKIFSILLNAGYVVSLKKSEIAQREVEFLGFNITKEGRGLTDTFKQKLLNITPPKDL--KQLQSILGLLNF 399          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_SFVCP (Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.744e-14
Identity = 50/151 (33.11%), Postives = 76/151 (50.33%), Query Frame = 1
Query:   94 DLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHF-PDQQLSKKQVQQFLGIINY 543
            DL +GFW   I P   + TAF      Y WT LP G   +P++F    V +   +  +  +Y+D+I L   +  EH Q L + + I+   G ++S KKS I   T+EFLG  I  +          +LL+  P + L  KQ+Q  LG++N+
Sbjct:  252 DLANGFWAHPITPDSYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADAVDLLKEV-PNVQVYVDDIYLSHDNPHEHIQQLEKVFQILLQAGYVVSLKKSEIGQRTVEFLGFNITKEGRGLTDTFKTKLLNVTPPKDL--KQLQSILGLLNF 399          
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_HTL1C (Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A) GN=gag-pro-pol PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11
Identity = 44/129 (34.11%), Postives = 63/129 (48.84%), Query Frame = 1
Query:   94 DLKSGFWQLGIKPSERYKTAFCIPN-------AHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHH-----ALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDH 444
            DLK  F+Q+ +    +   AF +P          Y W VLP G K +P++F+  +  I  PI         L Y+D+ILL S SHA+   L       + SHG+ +S  K+     TI+FLG II  +H
Sbjct:  680 DLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPSHADLQLLSEATMASLISHGLPVSENKTQQTPGTIKFLGQIISPNH 808          
The following BLAST results are available for this feature:
BLAST of CX288707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
POL5_DROME4.274e-1831.87Retrovirus-related Pol polyprotein from transposon... [more]
POLY_DROME4.725e-1726.44Retrovirus-related Pol polyprotein from transposon... [more]
POL4_DROME7.544e-1529.67Retrovirus-related Pol polyprotein from transposon... [more]
POL_SFV3L9.853e-1531.79Pro-Pol polyprotein OS=Simian foamy virus type 3 (... [more]
POL_FOAMV9.853e-1533.77Pro-Pol polyprotein OS=Human spumaretrovirus GN=po... [more]
POL_FFV2.195e-1430.72Pro-Pol polyprotein OS=Feline foamy virus GN=pol P... [more]
YRD6_CAEEL2.867e-1427.62Uncharacterized protein K02A2.6 OS=Caenorhabditis ... [more]
POL_SFV12.867e-1433.11Pro-Pol polyprotein OS=Simian foamy virus type 1 G... [more]
POL_SFVCP3.744e-1433.11Pro-Pol polyprotein OS=Simian foamy virus (isolate... [more]
POL_HTL1C1.739e-1134.11Gag-Pro-Pol polyprotein OS=Human T-cell leukemia v... [more]

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Properties
Property NameValue
Genbank descriptionC02003E03SK IF1 Citrus clementina cDNA clone C02003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288707 ID=CX288707; Name=CX288707; organism=Citrus clementina; type=EST; length=544bp
CTAAATATGTTTTTGCAAGATCACAAATTTCCTTTGCCCCGATGACAAAG
CATGTTTACTTTTCTAAAAAATGCCCAGATCTTTTCCAAATTTGATTTAA
AATCAGGTTTTTGGCAATTAGGCATTAAACCCTCGGAGCGTTACAAAACT
GCTTTTTGTATCCCAAATGCCCATTATCAATGGACAGTCCTTCCCTTCGG
CCTCAAAACTGCCCCATCCATTTTTCAAAAATCCATGGTCAAAATCTTTC
ACCCTATCCTGCATCATGCATTAATTTACATTGATAATATCTTGCTTTTT
TCAGGGTCACATGCTGAACATCACCAGTTGTTAACTCAATTCTATGATAT
TGTTCAAAGTCATGGAATCATGCTGTCTGCCAAGAAAAGCACCATTGCCA
CGGATACCATTGAATTCCTTGGTATGATCATAAAGGACGACCATTATCAG
CCAGGAAAGCACATTGCCCAAGAGTTGCTTCACTTTCCAGATCAGCAACT
TTCCAAAAAGCAAGTTCAACAGTTTCTAGGCATTATCAATTACA
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