CX288707
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 4.274e-18 Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHP-ILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LN +P+P + L NA+ F+ DL SGF Q+ +K S+ KTAF N Y++ LPFGLK AP+IFQ+ + I I +YID+I++FS + H + L + + ++ +KS +EFLG I+ D + + + P S K++++FLG+ +Y Sbjct: 187 LNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMP-PPTSVKELKRFLGMTSY 367
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17 Identity = 46/174 (26.44%), Postives = 94/174 (54.02%), Query Frame = 1 Query: 25 KFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIF-HPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 ++P+P + L A+ F+ DLKSG+ Q+ + +R KT+F + Y++ LPFGL+ A SIFQ+++ + I +Y+D++++FS + ++H + + + + +S +K+ +++E+LG I+ D + + + +P+ K V+ FLG+ +Y Sbjct: 254 RYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYK-VRSFLGLASY 426
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15 Identity = 54/182 (29.67%), Postives = 85/182 (46.70%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPI-LHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 +N L KFPLPR + L A+ FS DL SGF Q+ + R T+F N Y++T LPFGLK AP+ FQ+ M F I A +Y+D++++ S + LT+ + + + + L +K + + FLG D P + ++P ++F+ NY Sbjct: 379 INKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPH-DADSARRFVAFCNY 559
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_SFV3L (Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 48/151 (31.79%), Postives = 79/151 (52.32%), Query Frame = 1 Query: 94 DLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHF-PDQQLSKKQVQQFLGIINY 543 DL +GFW I P + TAF Y WT LP G +P++F +V + + + +Y+D+I + EH + L + + ++ + G ++S KKS IA +EFLG I + + Q+LL+ P + L KQ+Q LG++N+ Sbjct: 252 DLSNGFWAHSITPESYWLTAFTWLGQQYCWTRLPQGFLNSPALFTADVVDLLKEV-PNVQVYVDDIYISHDDPREHLEQLEKVFSLLLNAGYVVSLKKSEIAQHEVEFLGFNITKEGRGLTETFKQKLLNITPPRDL--KQLQSILGLLNF 399
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_FOAMV (Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 51/151 (33.77%), Postives = 76/151 (50.33%), Query Frame = 1 Query: 94 DLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHF-PDQQLSKKQVQQFLGIINY 543 DL +GFW I P + TAF Y WT LP G +P++F +V + I + +Y+D+I L EH Q L + + I+ G ++S KKS I T+EFLG I + +LL+ P + L KQ+Q LG++N+ Sbjct: 252 DLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEI-PNVQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLLNITPPKDL--KQLQSILGLLNF 399
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_FFV (Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14 Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 1 Query: 94 DLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIA---QELLHFPDQQLSKKQVQQFLGIINY 543 DL +GFW I P + + TAF Y WTVLP G +P +F +V + I + +Y+D++ + S EH + L ++ ++ G ++S KKS IA ++FLG I ++ G+ + +E L + KQ+Q LG++N+ Sbjct: 249 DLSNGFWAHPIVPEDYWITAFTWQGKQYCWTVLPQGFLNSPGLFTGDVVDLLQGI-PNVEVYVDDVYISHDSEKEHLEYLDILFNRLKEAGYIISLKKSNIANSIVDFLGFQITNE----GRGLTDTFKEKLENITAPTTLKQLQSILGLLNF 396
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: YRD6_CAEEL (Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14 Identity = 50/181 (27.62%), Postives = 91/181 (50.28%), Query Frame = 1 Query: 1 LNMFLQDHKFPLPR*QSMFTFLKNAQIFSKFDLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHFPDQQLSKKQVQQFLGIINY 543 LN L+D PLP + +F+ LK ++S+ DLK + Q+ + + +++ + FGLK AP+ FQK M K+ + A +Y D+I++ + S EH ++L + ++ + +G +SA+K A + FLG + D+H + E + +KQ+ FLG ++ Sbjct: 503 LNAALKDEFHPLPTSEDIFSRLKGT-VYSQIDLKDAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTGVA-VYWDDIIISASSIEEHEKILRELFERFKEYGFRVSAEKCAFAQKQVTFLGFV--DEHGRRPDSKKTEAIRSMKAPTDQKQLASFLGAADW 679
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_SFV1 (Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3) HSP 1 Score: 78.1814 bits (191), Expect = 2.867e-14 Identity = 50/151 (33.11%), Postives = 77/151 (50.99%), Query Frame = 1 Query: 94 DLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHF-PDQQLSKKQVQQFLGIINY 543 DL +GFW I P + TAF Y WT LP G +P++F +V + I + Y+D+I + EH + L + + I+ + G ++S KKS IA +EFLG I + Q+LL+ P + L KQ+Q LG++N+ Sbjct: 252 DLTNGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEI-PNVQAYVDDIYISHDDPQEHLEQLEKIFSILLNAGYVVSLKKSEIAQREVEFLGFNITKEGRGLTDTFKQKLLNITPPKDL--KQLQSILGLLNF 399
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_SFVCP (Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.744e-14 Identity = 50/151 (33.11%), Postives = 76/151 (50.33%), Query Frame = 1 Query: 94 DLKSGFWQLGIKPSERYKTAFCIPNAHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHHALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDHYQPGKHIAQELLHF-PDQQLSKKQVQQFLGIINY 543 DL +GFW I P + TAF Y WT LP G +P++F V + + + +Y+D+I L + EH Q L + + I+ G ++S KKS I T+EFLG I + +LL+ P + L KQ+Q LG++N+ Sbjct: 252 DLANGFWAHPITPDSYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADAVDLLKEV-PNVQVYVDDIYLSHDNPHEHIQQLEKVFQILLQAGYVVSLKKSEIGQRTVEFLGFNITKEGRGLTDTFKTKLLNVTPPKDL--KQLQSILGLLNF 399
BLAST of CX288707 vs. ExPASy Swiss-Prot
Match: POL_HTL1C (Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A) GN=gag-pro-pol PE=3 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11 Identity = 44/129 (34.11%), Postives = 63/129 (48.84%), Query Frame = 1 Query: 94 DLKSGFWQLGIKPSERYKTAFCIPN-------AHYQWTVLPFGLKTAPSIFQKSMVKIFHPILHH-----ALIYIDNILLFSGSHAEHHQLLTQFYDIVQSHGIMLSAKKSTIATDTIEFLGMIIKDDH 444 DLK F+Q+ + + AF +P Y W VLP G K +P++F+ + I PI L Y+D+ILL S SHA+ L + SHG+ +S K+ TI+FLG II +H Sbjct: 680 DLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWRVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPSHADLQLLSEATMASLISHGLPVSENKTQQTPGTIKFLGQIISPNH 808 The following BLAST results are available for this feature:
BLAST of CX288707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288707 ID=CX288707; Name=CX288707; organism=Citrus clementina; type=EST; length=544bpback to top |