CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURPP (Uracil phosphoribosyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=upp PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 54/192 (28.12%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   + +RDR  S   F      +  L+      +LP T +++ TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  A+ +L  + V   +I+FL L++APEG+       P +K+  + +D  LNE
Sbjct:    7 FPNLFILDHPL-IQHKLSHMRDRDTSTRTFRELLREITLLMGYEITRNLPMTTRRLTTPLVEIDAPVIAGKKLAIVPVLRAGIGMSDGLLELVPSARVGHIGVYRAEDHRPVEYLVRLP-DLEDRVFILCDPMVATGYSAVHAVDVLKRRNVAGENIMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLNE 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_FINM2 (Uracil phosphoribosyltransferase OS=Finegoldia magna (strain ATCC 29328) GN=upp PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 54/176 (30.68%), Postives = 84/176 (47.73%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++RD+    + F      +  L+           + +V TP G         KKL  V I+R+G  M     +           ++RD    K + Y  KLP D+ ER ++++DP+LATG SA  AI  L E G    +I  +N+I+APEGI  V ++ P + I  + +D  LN+
Sbjct:   17 TILRDKNTGSNQFRQLVSEIATLMCYEVTRDFKLEDCEVETPIGKTTGQTLSGKKLGVVPILRAGLGMVEGFLSVLPAAKVGHIGLYRDPKTLKPVEYYCKLPKDVEERDIIVVDPMLATGGSAEAAITFLKEHGC--KNIKLVNIIAAPEGIKMVQEKHPDVDIYVAGLDEKLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BREBN (Uracil phosphoribosyltransferase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=upp PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 53/176 (30.11%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T IRD+     +F    D +  L+       +P  E  + TP  +  + V   KK+  V I+R+G  M + L             ++RD +  + +  Y KLP+D++ER +++ DP+LATG SA  A+  L ++G    ++  + LI+APEGI  V    P + I  + +D  LN+
Sbjct:   17 TYIRDKNTGTKEFRELVDEVTTLMGYEITRDMPLEEITIETPVATCQSNVIAGKKVGLVPILRAGLGMVDGLMRLIPAAKVGHVGLYRDPETLQPIEYYVKLPSDVAERELIVTDPMLATGGSAVAALTALKKRGA--KNLKLMCLIAAPEGIKLVQDEHPDVDIYVAAVDEYLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_ALKOO (Uracil phosphoribosyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=upp PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 54/176 (30.68%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            TLIRD+     DF      +  L+       L   E ++ TP  +        +KL  V I+R+G  M + +             ++RD +  + +  Y KLP D+ ER +++LDP+LATG SAN AIQ + ++G   ++I  + L+S P+GI  V +  P + I  + ID  L++
Sbjct:   17 TLIRDKNTGSKDFRALVREISMLMGYEVTRDLSLEEIEIETPVCTTKAKTLTGRKLGIVPILRAGLGMVDGILELIPAAKVGHVGLYRDPETLEPVEYYVKLPTDVHERELIVLDPMLATGGSANAAIQFIKDRGA--TNIKLVCLVSCPQGIAAVQEAHPDVDIYVAAIDETLDD 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRPN (Uracil phosphoribosyltransferase OS=Streptococcus pneumoniae GN=upp PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 55/176 (31.25%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R    S   F    D +  L+    L  LP  + ++ TP           KKL  V I+R+G  M + L             ++RD +  + + Y  KLP DI +R + ++DP+LATG SA  A+  L ++G   S+I F+ L+SAPEG+  + +  P ++I T+ +D  LNE
Sbjct:   17 SILRRTDTSTKAFRELVDEIAMLMGYEVLRDLPLEDVEIETPITKTVQKQLAGKKLAIVPILRAGIGMVDGLLNLVPAAKVGHIGMYRDEETLQPVEYLVKLPEDIDQRQIFVVDPMLATGGSAILAVDSLKKRGA--SNIKFVCLVSAPEGVKALQEAHPDVEIFTAALDERLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_FUSNN (Uracil phosphoribosyltransferase OS=Fusobacterium nucleatum subsp. nucleatum GN=upp PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 57/178 (32.02%), Postives = 91/178 (51.12%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPT--GSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++R        F    + + +L+      +L     +V TP      YT  D   K+  V I+R+G  M + +             ++R+ +  + + Y  KLP DI+ R V+L+DP+LATG SA  AI  L E+GV +  IIF+ L++AP+GI  +  + P + I T++ID  LNE
Sbjct:   16 TILRSVDTDTKSFRENLNEIAKLMTYEATKNLKLETTEVTTPLMKTQAYTLQD---KVALVPILRAGLGMVDGILDLIPTAKVGHIGVYRNEETLEPVYYYCKLPTDIASRKVILVDPMLATGGSAVYAIDYLKEQGVTD--IIFMCLVAAPDGIARLLNKHPDVPIYTAKIDQGLNE 188          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_UREPA (Uracil phosphoribosyltransferase OS=Ureaplasma parvum GN=upp PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 55/184 (29.89%), Postives = 97/184 (52.72%), Query Frame = 1
Query:   82 HTLIRD-----RGISKHDFVFYS--DRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            H LI+D     R +S    VF +  + L +L+V      L   E ++ TP   +  G     K+C + I+R+G  M + +++           ++R+    K + Y +K P +ISE  V++LDP+LATG S  +A+  +++K  P+S I F+ +++APEG+  V +  P + +  + +D  LNE
Sbjct:    7 HPLIKDKLTRMRKVSTVSTVFRTNLEELTQLMVYEATKDLELNEIEIETPVVKVAKGYKLKNKICLIPILRAGIGMVDGVKSLIPTATIGHIGLYRNEQTLKPVEYFKKFPKNISESDVIILDPMLATGGSVVEAVN-IIKKYNPKS-IKFVCIVAAPEGLKYVQEVHPEVDVYIAALDDKLNE 188          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_UREP2 (Uracil phosphoribosyltransferase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=upp PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 55/184 (29.89%), Postives = 97/184 (52.72%), Query Frame = 1
Query:   82 HTLIRD-----RGISKHDFVFYS--DRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            H LI+D     R +S    VF +  + L +L+V      L   E ++ TP   +  G     K+C + I+R+G  M + +++           ++R+    K + Y +K P +ISE  V++LDP+LATG S  +A+  +++K  P+S I F+ +++APEG+  V +  P + +  + +D  LNE
Sbjct:    7 HPLIKDKLTRMRKVSTVSTVFRTNLEELTQLMVYEATKDLELNEIEIETPVVKVAKGYKLKNKICLIPILRAGIGMVDGVKSLIPTATIGHIGLYRNEQTLKPVEYFKKFPKNISESDVIILDPMLATGGSVVEAVN-IIKKYNPKS-IKFVCIVAAPEGLKYVQEVHPEVDVYIAALDDKLNE 188          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACDB (Uracil phosphoribosyltransferase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=upp PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 53/171 (30.99%), Postives = 85/171 (49.71%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEID 594
            T+IR +    ++F      +  L+       LP  + ++ TP G         KKL  V I+R+G  M N +             ++RD +  K + Y  K+P D++ER  L++DP+LATG SAN AI+ L ++GV +  I    L++APEG+  V    P + I  + +D
Sbjct:   17 TIIRRKETGSNEFRRIVGEIAGLMTYEITRDLPLQDVEIETPMGKTVQKELAGKKLTIVPILRAGMGMVNGVLEMIPSAKVGVVGMYRDEETLKPVEYFFKVPKDVTERECLVVDPMLATGGSANLAIEALKKRGVTD--IKLAVLVAAPEGVKAVQDEHPDVDIYAAALD 185          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACDA (Uracil phosphoribosyltransferase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=upp PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 53/171 (30.99%), Postives = 85/171 (49.71%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEID 594
            T+IR +    ++F      +  L+       LP  + ++ TP G         KKL  V I+R+G  M N +             ++RD +  K + Y  K+P D++ER  L++DP+LATG SAN AI+ L ++GV +  I    L++APEG+  V    P + I  + +D
Sbjct:   17 TIIRRKETGSNEFRRIVGEIAGLMTYEITRDLPLQDVEIETPMGKTVQKELAGKKLTIVPILRAGMGMVNGVLEMIPSAKVGVVGMYRDEETLKPVEYFFKVPKDVTERECLVVDPMLATGGSANLAIEALKKRGVTD--IKLAVLVAAPEGVKAVQDEHPDVDIYAAALD 185          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_BURPP8.207e-1428.13Uracil phosphoribosyltransferase OS=Burkholderia p... [more]
UPP_FINM21.072e-1330.68Uracil phosphoribosyltransferase OS=Finegoldia mag... [more]
UPP_BREBN1.072e-1330.11Uracil phosphoribosyltransferase OS=Brevibacillus ... [more]
UPP_ALKOO1.072e-1330.68Uracil phosphoribosyltransferase OS=Alkaliphilus o... [more]
UPP_STRPN1.400e-1331.25Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_FUSNN1.400e-1332.02Uracil phosphoribosyltransferase OS=Fusobacterium ... [more]
UPP_UREPA1.828e-1329.89Uracil phosphoribosyltransferase OS=Ureaplasma par... [more]
UPP_UREP21.828e-1329.89Uracil phosphoribosyltransferase OS=Ureaplasma par... [more]
UPP_LACDB1.828e-1330.99Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_LACDA1.828e-1330.99Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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