CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_MACFA (Uracil phosphoribosyltransferase OS=Macaca fascicularis GN=UPRT PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.045e-37
Identity = 83/176 (47.16%), Postives = 112/176 (63.64%), Query Frame = 1
Query:   67 QIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEI 591
            QIR + T+IRD+  S+ DF+F +DRLIRLVVE GL  LP+ E  V TPTG  Y GV F K  CGVSI+RSGE+ME  LR           LI  D +  + ++ Y K P DI  R VLL+ P+L+TGN+  +A+++L+E GV  S II L+L S P G   + + FP + I+T+E+
Sbjct:  118 QIRELQTIIRDKTASRGDFMFSADRLIRLVVEEGLNQLPYKECMVTTPTGYKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIYRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEV 293          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_HUMAN (Uracil phosphoribosyltransferase OS=Homo sapiens GN=UPRT PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.045e-37
Identity = 83/176 (47.16%), Postives = 112/176 (63.64%), Query Frame = 1
Query:   67 QIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEI 591
            QIR + T+IRD+  S+ DF+F +DRLIRLVVE GL  LP+ E  V TPTG  Y GV F K  CGVSI+RSGE+ME  LR           LI  D +  + ++ Y K P DI  R VLL+ P+L+TGN+  +A+++L+E GV  S II L+L S P G   + + FP + I+T+E+
Sbjct:  118 QIRELQTIIRDKTASRGDFMFSADRLIRLVVEEGLNQLPYKECMVTTPTGYKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIYRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEV 293          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CHICK (Uracil phosphoribosyltransferase OS=Gallus gallus GN=UPRT PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.045e-37
Identity = 84/176 (47.73%), Postives = 112/176 (63.64%), Query Frame = 1
Query:   67 QIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEI 591
            QIR + T+IRD+  S+ DFVF +DRLIRLVVE  L  LP+TE  V TPTG  Y GV F K  CGVSI+RSGE+ME  LR           LI  D +  + ++ Y K P DI  R VLL+ P+L+TGN+  +A+++L+E GV  S II L+L S P G   + + FP + I+T+E+
Sbjct:   86 QIRELQTIIRDKTASRGDFVFSADRLIRLVVEERLNQLPYTECTVTTPTGYKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIYRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEV 261          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BOVIN (Uracil phosphoribosyltransferase OS=Bos taurus GN=UPRT PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.045e-37
Identity = 83/176 (47.16%), Postives = 112/176 (63.64%), Query Frame = 1
Query:   67 QIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEI 591
            QIR + T+IRD+  S+ DF+F +DRLIRLVVE GL  LP+ E  V TPTG  Y GV F K  CGVSI+RSGE+ME  LR           LI  D +  + ++ Y K P DI  R VLL+ P+L+TGN+  +A+++L+E GV  S II L+L S P G   + + FP + I+T+E+
Sbjct:  115 QIRELQTIIRDKTASRGDFMFSADRLIRLVVEEGLNQLPYEECMVTTPTGFKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIYRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEV 290          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP2_SCHPO (Probable uracil phosphoribosyltransferase 2 OS=Schizosaccharomyces pombe GN=SPAC1399.04c PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.591e-33
Identity = 79/191 (41.36%), Postives = 119/191 (62.30%), Query Frame = 1
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXL-IHRDGDNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALN 606
            NV V++ T  +  + T++RD+     +FV  ++ +I ++++  L  LP+ +  + T +G  YTGV   + +CGVSI+R+GESME  L A          L + RD    + +L++ KLP D  +R VLLLDP+LATGNS   AIQ L+ KG+PE +I+F+NLI+  EGI  V  +FP L++VT+ ID  LN
Sbjct:   10 NVVVLRQTMYLLSLMTILRDQQTGHSEFVRTANLIINMLMQEALSALPYKKCLIKTSSGGTYTGVQPARDICGVSILRAGESMEYGLAAACNYSVPVGKLLVQRDETTFEAKLMFCKLPKDAQDRLVLLLDPLLATGNSVILAIQTLINKGIPEENIVFVNLIACNEGITNVFAKFPKLRMVTASIDPELN 200          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_THEPX (Uracil phosphoribosyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=upp PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.707e-19
Identity = 69/194 (35.57%), Postives = 100/194 (51.55%), Query Frame = 1
Query:   31 IYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +Y NV+VI     I+   +LIRD      +F    + +  L+       LP  E +V TP     T V   KKL  + I+R+G  M + +             I+RD +  K + Y  KLP+DI+ER ++++DP+LATG SA  AI  L E+G    +I  +NLI+APEGI  V +  P + I  + ID  LNE
Sbjct:    1 MYKNVFVIDHPL-IQHKISLIRDENTGSKEFRELVEEIAMLMAYEVTRDLPLEEIEVKTPVAVAKTKVIAGKKLGIIPILRAGLGMVDGMLKLIPAAKVGHIGIYRDPETLKPVEYYCKLPSDIAERDLIVVDPMLATGGSACAAIHFLKERGA--QNIKLVNLIAAPEGIEAVHRDHPEVPIYVASIDQGLNE 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_THEP3 (Uracil phosphoribosyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=upp PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.707e-19
Identity = 69/194 (35.57%), Postives = 100/194 (51.55%), Query Frame = 1
Query:   31 IYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +Y NV+VI     I+   +LIRD      +F    + +  L+       LP  E +V TP     T V   KKL  + I+R+G  M + +             I+RD +  K + Y  KLP+DI+ER ++++DP+LATG SA  AI  L E+G    +I  +NLI+APEGI  V +  P + I  + ID  LNE
Sbjct:    1 MYKNVFVIDHPL-IQHKISLIRDENTGSKEFRELVEEIAMLMAYEVTRDLPLEEIEVKTPVAVAKTKVIAGKKLGIIPILRAGLGMVDGMLKLIPAAKVGHIGIYRDPETLKPVEYYCKLPSDIAERDLIVVDPMLATGGSACAAIHFLKERGA--QNIKLVNLIAAPEGIEAVHRDHPEVPIYVASIDQGLNE 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_THETN (Uracil phosphoribosyltransferase OS=Thermoanaerobacter tengcongensis GN=upp PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.230e-19
Identity = 70/194 (36.08%), Postives = 99/194 (51.03%), Query Frame = 1
Query:   31 IYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +Y NV+VI     I+   +LIRD      +F      +  L+       LP  E +V TP     T V   KKL  + I+R+G  M + +             I+RD +  K + Y  KLP+DI+ER ++++DP+LATG SA+ AI  L E+G     I  +NLI+APEGI  V K  P + I  + ID  LNE
Sbjct:    1 MYENVFVIDHPL-IQHKISLIRDENTGSKEFRELVGEIAMLMAYEVTRDLPLEEIEVKTPIAVAKTKVIAGKKLGIIPILRAGLVMADGMLKLIPTAKVGHIGIYRDPETLKPVEYYCKLPSDIAERDLIVVDPMLATGGSASAAIHFLKERGA--QSIKLVNLIAAPEGIKAVHKDHPEVPIYVASIDQGLNE 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_RALSO (Uracil phosphoribosyltransferase OS=Ralstonia solanacearum GN=upp PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.230e-19
Identity = 58/192 (30.21%), Postives = 100/192 (52.08%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T + + TP G M   V   +KL  V ++R+G  M + L             ++RD  +       +LP D+ ER  +L DP++ATG+SA  A+ ++ ++GVP+ HI+FL L++APEG+    +  P +K+  + +D  LNE
Sbjct:    7 FPNLFILNHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPLTTRHIETPMGPMDAPVIAGRKLAVVPVLRAGVGMSDGLLELIPSARVGHIGVYRDEQHRPVEYLVRLP-DLEERTFILCDPMVATGHSAVHAVDVMKQRGVPDEHILFLALVAAPEGVEVFQQAHPGVKLYVASLDSHLNE 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_RALPJ (Uracil phosphoribosyltransferase OS=Ralstonia pickettii (strain 12J) GN=upp PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.560e-17
Identity = 56/192 (29.17%), Postives = 98/192 (51.04%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN+ ++     I+   T +RD+  S   F      +  L+      +LP T + + TP G M   V   +KL  V ++R+G  M + L             ++RD  +       +LP D+ +R  +L DP++ATG SA  A+ ++ ++GVP+ +I+FL L++APEG+    K  P +K+  + +D  L+E
Sbjct:    7 FPNLSILNHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPLTSRHIDTPMGPMEAPVIAGRKLAVVPVLRAGVGMSDGLVELIPSARIGHIGVYRDDQHRPVEYLVRLP-DLEDRTFILCDPMVATGYSAVHAVDVMKKRGVPDENILFLALVAAPEGVEVFQKAHPGVKLFVASLDSHLDE 196          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_MACFA4.045e-3747.16Uracil phosphoribosyltransferase OS=Macaca fascicu... [more]
UPP_HUMAN4.045e-3747.16Uracil phosphoribosyltransferase OS=Homo sapiens G... [more]
UPP_CHICK4.045e-3747.73Uracil phosphoribosyltransferase OS=Gallus gallus ... [more]
UPP_BOVIN4.045e-3747.16Uracil phosphoribosyltransferase OS=Bos taurus GN=... [more]
UPP2_SCHPO1.591e-3341.36Probable uracil phosphoribosyltransferase 2 OS=Sch... [more]
UPP_THEPX1.707e-1935.57Uracil phosphoribosyltransferase OS=Thermoanaeroba... [more]
UPP_THEP31.707e-1935.57Uracil phosphoribosyltransferase OS=Thermoanaeroba... [more]
UPP_THETN2.230e-1936.08Uracil phosphoribosyltransferase OS=Thermoanaeroba... [more]
UPP_RALSO2.230e-1930.21Uracil phosphoribosyltransferase OS=Ralstonia sola... [more]
UPP_RALPJ3.560e-1729.17Uracil phosphoribosyltransferase OS=Ralstonia pick... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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