CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACLM (Uracil phosphoribosyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=upp PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.821e-14
Identity = 52/176 (29.55%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R +  S  +F    D +  L+       LP  + ++ TP           KKL  V I+R+G  M + +             ++RD +  K + Y  KLP DI++R + L+DP+LATG SA  A+  L ++     +I F+ L++APEG+  + +  P ++I T+ +D  LNE
Sbjct:   17 SILRRKEASTKEFRELVDEIGMLMAYEVSRDLPLEDVEIETPVQKTTVKQIAGKKLAIVPILRAGIGMVDGILKLIPAARVGHIGMYRDEETLKPVEYLVKLPADIADRQIFLVDPMLATGGSAILAVDSLKKRNAKAENIKFVCLVAAPEGVKALQEAHPDIEIYTAALDEKLNE 192          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOTH (Uracil phosphoribosyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=upp PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 59/191 (30.89%), Postives = 99/191 (51.83%), Query Frame = 1
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            NV+V+     I+   +L+RD+     +F      +  L+      ++P  E ++ TP G   T V   KK+  V I+R+G  M + +             ++RD +  + + Y  KLP DI+ER +++LDP+LATG SA+ AI+ L E+GV  + I  + LI++ +GI  +    P + I  + +D  LNE
Sbjct:    3 NVFVMDHPL-IQHKISLLRDKNTQTKEFRELVSEISMLMGYEVTRNMPLKEVEIETPVGVARTKVISGKKMGIVPILRAGLGMVDGMLKLLPMAKVGHIGLYRDPETLQPVEYYCKLPCDIAEREIVVLDPMLATGGSASAAIKYLKERGV--TSIKLMCLIASLDGIKKINDEHPDVLIYCAAVDDKLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_NATTJ (Uracil phosphoribosyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=upp PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 56/175 (32.00%), Postives = 90/175 (51.43%), Query Frame = 1
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            IRD+      F    + +  L+       L   E +V TP  +  T +   KKL  V I+R+G  M  ++R            ++RD +  + + Y  KLP DI ER +++LDP+LATG SA  +IQ + ++G   ++I F+ + +APEG+  + K  P + I T  +D  LNE+
Sbjct:   19 IRDKETGSKTFRELVNEVSMLMAYEVTRELQTEEYEVETPISTAKTRILSGKKLGLVPILRAGLGMVESVRNLIPAARVGHIGVYRDPETLQPVEYYCKLPQDIHERELIVLDPMLATGGSAKASIQFIKDRG--GTNIRFMCINAAPEGVEELQKAHPDVDIWTCAVDEKLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACLS (Uracil phosphoribosyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=upp PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 52/176 (29.55%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R +  S  +F    D +  L+       LP  + ++ TP           KKL  V I+R+G  M + +             ++RD +  K + Y  KLP DI++R + L+DP+LATG SA  A+  L ++     +I F+ L++APEG+  + +  P ++I T+ +D  LNE
Sbjct:   17 SILRRKEASTKEFRELVDEIGMLMAYEVSRDLPLEDVEIETPVQKTTVKQIAGKKLAIVPILRAGIGMVDGILKLIPAARVGHIGMYRDEETLKPVEYLVKLPADIADRQIFLVDPMLATGGSAILAVDSLKKRNSKAENIKFVCLVAAPEGVKALQEAHPDIEIYTAALDEKLNE 192          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_UREU1 (Uracil phosphoribosyltransferase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=upp PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.284e-14
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 1
Query:   82 HTLIRD-----RGISKHDFVFYS--DRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            H LI+D     R +S    VF +  + L +L+V      L   E ++ TP      G     K+C + I+R+G  M + +++           ++R+ +  K + Y +K P +ISE  V++LDP+LATG S  +A+  +++K  P+S I F+ +++APEG+  V K  P + +  + +D  LNE
Sbjct:    7 HPLIKDKLTRMRKVSTVSTVFRTNLEELTQLMVYEATKDLELNEIEIETPVVKNAKGYKLKNKICLIPILRAGIGMVDGVKSLIPTATIGHIGLYRNEETLKPVEYFKKFPKNISESDVIILDPMLATGGSVVEAVN-IIKKYNPKS-IKFVCIVAAPEGLEYVQKIHPDVDVYIAALDDKLNE 188          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRR6 (Uracil phosphoribosyltransferase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=upp PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.284e-14
Identity = 55/176 (31.25%), Postives = 90/176 (51.14%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R    S   F    D +  L+    L  LP  + ++ TP           KKL  V I+R+G  M + L +           ++RD +  + + Y  KLP DI +R + ++DP+LATG SA  A+  L ++G   S+I F+ L+SAPEG+  + +  P ++I T+ +D  LNE
Sbjct:   17 SILRRTDTSTKAFRELVDEIAMLMGYEVLRDLPLEDVEIETPITKTVQKQLAGKKLAIVPILRAGIGMVDGLLSLVPAAKVGHIGMYRDEETLQPVEYLVKLPEDIDQRQIFVVDPMLATGGSAILAVDSLKKRGA--SNIKFVCLVSAPEGVKALQEAHPDVEIFTAALDERLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_RHOCS (Uracil phosphoribosyltransferase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=upp PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.284e-14
Identity = 60/192 (31.25%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALN 606
            +PN++++     I+   + +RDR  S   F      +  L+       LP T + + TP  +M   V   KKL  V I+R+G  M   L             ++RD D    + Y  KLP D + R  +L+DP+LATGNSA  A+ +L   GV ++ I F+ L++APEG+       P++ + T+ +D  LN
Sbjct:    7 FPNLFILDHPL-IQHKLSHMRDRQRSTMGFRQLLKEIALLMGYEITRDLPLTTEAIETPLCTMDAPVIEGKKLAIVPILRAGLIMAEGLLELVPAAREGHIGLYRDHDTKMPVEYLVKLP-DPAGRRFILVDPMLATGNSAVHAVDVLNRNGVLDAQIRFMALVAAPEGVRTFHAAHPTVPVFTAGLDSHLN 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURXL (Uracil phosphoribosyltransferase OS=Burkholderia xenovorans (strain LB400) GN=upp PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.284e-14
Identity = 54/192 (28.12%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   + +RDR  S   F      +  L+      +LP T +++ TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  A+ +L  + V   +I+FL L++APEG+       P +K+  + +D  LNE
Sbjct:    7 FPNLFILDHPL-IQHKLSHMRDRDTSTRTFRELLREITLLMGYEITRNLPMTTRRLTTPLVEIDAPVIAGKKLAIVPVLRAGIGMSDGLLELVPSARVGHIGVYRAEDHRPVEYLVRLP-DLEDRVFILCDPMVATGYSAVHAVDVLKRRNVAGENILFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLNE 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_RHOOB (Uracil phosphoribosyltransferase OS=Rhodococcus opacus (strain B4) GN=upp PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 58/180 (32.22%), Postives = 96/180 (53.33%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTP----TGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++R +  S + F   ++ +  L+    L  +P  E ++ TP    TG +  G    KKL  VSI+R+G  + + +             ++RD      +  Y K+P D+ ER V+++DP+LATGNSA  A++ L E G P+S I F+ L++ PEG+  + K  P + I T+ +D  L+E
Sbjct:   17 TMMRRKDASTNSFRRLANEISALMTYEVLRDIPMQEIEIETPLEVTTGRVIDG----KKLVFVSILRAGTGILDGMLTIVPGARVGHIGLYRDPRTLVAVEYYFKMPGDLHERDVVVVDPLLATGNSAVAAVERLKECG-PKS-IKFVCLLTCPEGVAALDKAHPDVPIYTAAVDRQLDE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLONN (Uracil phosphoribosyltransferase OS=Clostridium novyi (strain NT) GN=upp PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 55/175 (31.43%), Postives = 84/175 (48.00%), Query Frame = 1
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +IR++     DF    + +  L+       LP  E ++ TP       +   KK+  V I+R+G  M + +             ++RD +  K + Y  K+P DI ER +++ DP+LATG SA  AI  L ++G     I  + LIS+PEGI  V    P + I   +ID  LNE
Sbjct:   18 IIRNKNTGSKDFRELVEEVAMLMAYEVTRDLPLEEVEIETPICKTKCKMLSGKKMAIVPILRAGLGMVDGMLKLIPAAKVGHIGMYRDEETFKPVEYFCKMPQDIHERDIIVTDPMLATGGSAIDAINALKKRGA--KSIRLMCLISSPEGIKAVMDAHPDVDIYVGDIDERLNE 190          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_LACLM2.821e-1429.55Uracil phosphoribosyltransferase OS=Lactococcus la... [more]
UPP_CLOTH3.684e-1430.89Uracil phosphoribosyltransferase OS=Clostridium th... [more]
UPP_NATTJ4.811e-1432.00Uracil phosphoribosyltransferase OS=Natranaerobius... [more]
UPP_LACLS4.811e-1429.55Uracil phosphoribosyltransferase OS=Lactococcus la... [more]
UPP_UREU16.284e-1430.43Uracil phosphoribosyltransferase OS=Ureaplasma ure... [more]
UPP_STRR66.284e-1431.25Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_RHOCS6.284e-1431.25Uracil phosphoribosyltransferase OS=Rhodospirillum... [more]
UPP_BURXL6.284e-1428.13Uracil phosphoribosyltransferase OS=Burkholderia x... [more]
UPP_RHOOB8.207e-1432.22Uracil phosphoribosyltransferase OS=Rhodococcus op... [more]
UPP_CLONN8.207e-1431.43Uracil phosphoribosyltransferase OS=Clostridium no... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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