CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOPH (Uracil phosphoribosyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=upp PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 53/176 (30.11%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            ++R +  S  +F      +  L+      +LP  +K+V TP           KKLC V I+R+G  M + +             ++R+ +  + + Y  KLP+D  +R + ++DP+LATG SA  AI LL  +G+ +  I FL LI+APEG+  + +  P + +    +D  LNE+
Sbjct:   18 IMRMKTTSTKEFRDLVAEVAMLIYYEASRNLPLADKEVETPLTKAIVKEIEGKKLCVVPILRAGMHMADGILNLTPNAKVGHIGLYRNEETLEPVEYFCKLPSDAPDREIFVVDPMLATGGSAIAAITLLKRRGIEK--IRFLCLIAAPEGLKKLQEAHPDVDVFIGALDERLNEQ 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BRUSU (Uracil phosphoribosyltransferase OS=Brucella suis GN=upp PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++R +  S   F      +  L+      +L  T   + TP   M   V   KKL   SI+R+G  +   +             ++RD D  + +  Y K P DI  R V+++DP+LAT NSA  AI  L E+G   ++I FL L++APEGI    K  P +++ T+ ID  L+E+
Sbjct:   16 TIMRKKETSTASFQRLLKEISLLLCYEVTRNLELTTMSIETPLMPMEAPVLEGKKLVFASILRAGNGLLEGMLDLVPAARVAHIGLYRDHDTLQPIEYYFKAPEDIVNRLVIVVDPMLATANSAIAAIDKLKERGA--TNIRFLCLLAAPEGIERFTKAHPDVEVFTASIDERLDEK 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BRUSI (Uracil phosphoribosyltransferase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=upp PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++R +  S   F      +  L+      +L  T   + TP   M   V   KKL   SI+R+G  +   +             ++RD D  + +  Y K P DI  R V+++DP+LAT NSA  AI  L E+G   ++I FL L++APEGI    K  P +++ T+ ID  L+E+
Sbjct:   16 TIMRKKETSTASFQRLLKEISLLLCYEVTRNLELTTMSIETPLMPMEAPVLEGKKLVFASILRAGNGLLEGMLDLVPAARVAHIGLYRDHDTLQPIEYYFKAPEDIVNRLVIVVDPMLATANSAIAAIDKLKERGA--TNIRFLCLLAAPEGIERFTKAHPDVEVFTASIDERLDEK 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BRUME (Uracil phosphoribosyltransferase OS=Brucella melitensis GN=upp PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++R +  S   F      +  L+      +L  T   + TP   M   V   KKL   SI+R+G  +   +             ++RD D  + +  Y K P DI  R V+++DP+LAT NSA  AI  L E+G   ++I FL L++APEGI    K  P +++ T+ ID  L+E+
Sbjct:   16 TIMRKKETSTASFRRLLKEISLLLCYEVTRNLELTTMSIETPLMPMEAPVLEGKKLVFASILRAGNGLLEGMLDLVPAARVAHIGLYRDHDTLQPIEYYFKAPEDIVNRLVIVVDPMLATANSAIAAIDKLKERGA--TNIRFLCLLAAPEGIERFTKAHPDVEVFTASIDECLDEK 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BRUMB (Uracil phosphoribosyltransferase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=upp PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++R +  S   F      +  L+      +L  T   + TP   M   V   KKL   SI+R+G  +   +             ++RD D  + +  Y K P DI  R V+++DP+LAT NSA  AI  L E+G   ++I FL L++APEGI    K  P +++ T+ ID  L+E+
Sbjct:   16 TIMRKKETSTASFRRLLKEISLLLCYEVTRNLELTTMSIETPLMPMEAPVLEGKKLVFASILRAGNGLLEGMLDLVPAARVAHIGLYRDHDTLQPIEYYFKAPEDIVNRLVIVVDPMLATANSAIAAIDKLKERGA--TNIRFLCLLAAPEGIERFTKAHPDVEVFTASIDECLDEK 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BRUC2 (Uracil phosphoribosyltransferase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=upp PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++R +  S   F      +  L+      +L  T   + TP   M   V   KKL   SI+R+G  +   +             ++RD D  + +  Y K P DI  R V+++DP+LAT NSA  AI  L E+G   ++I FL L++APEGI    K  P +++ T+ ID  L+E+
Sbjct:   16 TIMRKKETSTASFQRLLKEISLLLCYEVTRNLELTTMSIETPLMPMEAPVLEGKKLVFASILRAGNGLLEGMLDLVPAARVAHIGLYRDHDTLQPIEYYFKAPEDIVNRLVIVVDPMLATANSAIAAIDKLKERGA--TNIRFLCLLAAPEGIERFTKAHPDVEVFTASIDERLDEK 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BRUAB (Uracil phosphoribosyltransferase OS=Brucella abortus GN=upp PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++R +  S   F      +  L+      +L  T   + TP   M   V   KKL   SI+R+G  +   +             ++RD D  + +  Y K P DI  R V+++DP+LAT NSA  AI  L E+G   ++I FL L++APEGI    K  P +++ T+ ID  L+E+
Sbjct:   16 TIMRKKETSTASFRRLLKEISLLLCYEVTRNLELTTMSIETPLMPMEAPVLEGKKLVFASILRAGNGLLEGMLDLVPAARVAHIGLYRDHDTLQPIEYYFKAPEDIVNRLVIVVDPMLATANSAIAAIDKLKERGA--TNIRFLCLLAAPEGIERFTKAHPDVEVFTASIDECLDEK 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BRUA1 (Uracil phosphoribosyltransferase OS=Brucella abortus (strain S19) GN=upp PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++R +  S   F      +  L+      +L  T   + TP   M   V   KKL   SI+R+G  +   +             ++RD D  + +  Y K P DI  R V+++DP+LAT NSA  AI  L E+G   ++I FL L++APEGI    K  P +++ T+ ID  L+E+
Sbjct:   16 TIMRKKETSTASFRRLLKEISLLLCYEVTRNLELTTMSIETPLMPMEAPVLEGKKLVFASILRAGNGLLEGMLDLVPAARVAHIGLYRDHDTLQPIEYYFKAPEDIVNRLVIVVDPMLATANSAIAAIDKLKERGA--TNIRFLCLLAAPEGIERFTKAHPDVEVFTASIDECLDEK 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOTE (Uracil phosphoribosyltransferase OS=Clostridium tetani GN=upp PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 56/176 (31.82%), Postives = 84/176 (47.73%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            TLIRD+     DF    + +  L+           E ++ TP     + V   KK+  V I+R+G  M + +             ++RD      + Y  KLP DI ER +++ DP+LATG SA  AI LL ++G    +I  + L++APEGI  V    P + I  + ID  L+E
Sbjct:   17 TLIRDKNTGAKDFRELVEEVAMLMAYEVTRDFNLKEVEIETPICKTKSKVLAGKKVAIVPILRAGLGMVDGILKLIPAAKVGHIGLYRDEKTLTPVEYFCKLPQDIGEREIIVTDPMLATGGSAADAIALLKKRGA--KYIRLVCLVAAPEGIKVVMDAHPDVDIYVASIDEKLDE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOK5 (Uracil phosphoribosyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=upp PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 57/175 (32.57%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            LIRD+     DF    + +  L+      +L   E ++ TP  +    +   KK+  V I+R+G  M   +             ++RD    K + Y  KLP DI ER V++ DP+LATG SA  AI +L +KG    +I  + LI+A +GI  V +  P + I T+ ID  LN+
Sbjct:   18 LIRDKRTGSKDFRELVEEVAMLMAYEVTRNLQTEEVEIETPICNTTCKMLSGKKVAVVPILRAGLGMVGGMLKLIPAAKVGHIGLYRDETTLKPVEYFCKLPQDIGEREVIVTDPMLATGGSAIDAITMLKQKGA--KNIRLMCLIAAEDGIKSVTEAHPDVDIYTAAIDKELNK 190          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_CLOPH1.828e-1330.11Uracil phosphoribosyltransferase OS=Clostridium ph... [more]
UPP_BRUSU1.828e-1332.20Uracil phosphoribosyltransferase OS=Brucella suis ... [more]
UPP_BRUSI1.828e-1332.20Uracil phosphoribosyltransferase OS=Brucella suis ... [more]
UPP_BRUME1.828e-1332.20Uracil phosphoribosyltransferase OS=Brucella melit... [more]
UPP_BRUMB1.828e-1332.20Uracil phosphoribosyltransferase OS=Brucella melit... [more]
UPP_BRUC21.828e-1332.20Uracil phosphoribosyltransferase OS=Brucella canis... [more]
UPP_BRUAB1.828e-1332.20Uracil phosphoribosyltransferase OS=Brucella abort... [more]
UPP_BRUA11.828e-1332.20Uracil phosphoribosyltransferase OS=Brucella abort... [more]
UPP_CLOTE2.388e-1331.82Uracil phosphoribosyltransferase OS=Clostridium te... [more]
UPP_CLOK52.388e-1332.57Uracil phosphoribosyltransferase OS=Clostridium kl... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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