CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACPL (Uracil phosphoribosyltransferase OS=Lactobacillus plantarum GN=upp PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 51/177 (28.81%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T+IR++      F    + +  L+       +P  + ++ TP           KK+  V I+R+G  M +               ++RD    K + Y  KLP+DIS+R + ++DP+LATG SA  A+ +L ++G   S+I F+ L++APEG+  +    P + + T+ +D  LNE+
Sbjct:   17 TIIREKNCGTKVFREMVNEISTLMAYEVSRDMPLKDIEIETPIAKSTQKTLAGKKVAIVPILRAGLGMVDGFLNMIPAAKVGHVGMYRDEKTLKPVEYFVKLPSDISQRQLFVVDPMLATGGSAIMAMDMLKKRGA--SNIKFMCLVAAPEGVKALRDAHPDIDVYTAALDDHLNED 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BACCL (Uracil phosphoribosyltransferase OS=Bacillus caldolyticus GN=upp PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 54/176 (30.68%), Postives = 83/176 (47.16%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T IRD+     +F    D +  L+       LP  E ++ TP       V   KKL  + I+R+G  M + +             ++RD    K +  Y KLP+D+ ER  +++DP+LATG SA  AI  L ++G     I F+ LI+AP  +  V    P + I  + +D  LN+
Sbjct:   17 TYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSKARAKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSDVEERDFIIVDPMLATGGSAVAAIDALKKRGA--KSIKFMCLIAAPGRVKAVETAHPDVDIYIAALDERLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_SYMTH (Uracil phosphoribosyltransferase OS=Symbiobacterium thermophilum GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 55/181 (30.39%), Postives = 87/181 (48.07%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCG-----VSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            ++IRD+     +F    + +  L+       LP  E +V TP          C++L G     + I+R+G  M   + +           ++RD D  K + Y  KLP D+ ER +L+LDP+LATG S   ++ L+  +G     I  L LI+APEG+  V +  P + I  + +D  LNE
Sbjct:   17 SIIRDKDTGPKEFRELVNEIAMLMAYEVTRDLPTEEVEVDTPIARAR-----CRRLAGEKLGLIPILRAGLGMVQGILSLYPTARVGHIGLYRDPDTLKPVEYYCKLPTDLGERELLVLDPMLATGGSVVASLDLIKRQG--GRRIKLLCLIAAPEGVQAVQEAHPDVDIYLAALDEMLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRMU (Uracil phosphoribosyltransferase OS=Streptococcus mutans GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  178 LPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            LP  E ++ TP           KKL  V I+R+G  M + L +           ++RD +  + + Y  KLP DI +R + ++DP+LATG SA  AI  L ++G   ++I F+ L+SAPEG+  + +  P + I T+ +D  LNE+
Sbjct:   48 LPLEEVEIETPITKTVQKQLTGKKLAIVPILRAGIGMVDGLLSLVPAAKVGHIGMYRDEETLEPVEYLVKLPEDIDQRQIFVVDPMLATGGSAVLAIDSLKKRGA--ANIKFVCLVSAPEGLKKLQEAHPDIDIYTAALDEKLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRA5 (Uracil phosphoribosyltransferase OS=Streptococcus agalactiae serotype V GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 52/176 (29.55%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R    S  DF    D +  L+       LP  + ++ TP  +        KKL  V I+R+G  M +   +           ++RD +  + + Y  KLP DI +R + ++DP+LATG SA  A+  L ++G   + I F+ L++APEG+  + +  P + I T+ +D  LNE
Sbjct:   17 SILRRTTTSTKDFRELVDEIAMLMGYEVSRDLPLEDVEIQTPVATTVQKQLAGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRDEETFQPVEYLVKLPEDIDQRQIFVVDPMLATGGSAILAVDSLKKRGA--ASIKFVCLVAAPEGVAALQEAHPDVDIYTAALDEKLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRA3 (Uracil phosphoribosyltransferase OS=Streptococcus agalactiae serotype III GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 52/176 (29.55%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R    S  DF    D +  L+       LP  + ++ TP  +        KKL  V I+R+G  M +   +           ++RD +  + + Y  KLP DI +R + ++DP+LATG SA  A+  L ++G   + I F+ L++APEG+  + +  P + I T+ +D  LNE
Sbjct:   17 SILRRTTTSTKDFRELVDEIAMLMGYEVSRDLPLEDVEIQTPVATTVQKQLAGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRDEETFQPVEYLVKLPEDIDQRQIFVVDPMLATGGSAILAVDSLKKRGA--ASIKFVCLVAAPEGVAALQEAHPDVDIYTAALDEKLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRA1 (Uracil phosphoribosyltransferase OS=Streptococcus agalactiae serotype Ia GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 52/176 (29.55%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R    S  DF    D +  L+       LP  + ++ TP  +        KKL  V I+R+G  M +   +           ++RD +  + + Y  KLP DI +R + ++DP+LATG SA  A+  L ++G   + I F+ L++APEG+  + +  P + I T+ +D  LNE
Sbjct:   17 SILRRTTTSTKDFRELVDEIAMLMGYEVSRDLPLEDVEIQTPVATTVQKQLAGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRDEETFQPVEYLVKLPEDIDQRQIFVVDPMLATGGSAILAVDSLKKRGA--ASIKFVCLVAAPEGVAALQEAHPDVDIYTAALDEKLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LISW6 (Uracil phosphoribosyltransferase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 1
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            NV+VI     ++   T+IRD+      F    D +  L+       +   + QV TP  +        KKL  V I+R+G  M++ +             ++RD D  + + Y  KLP+D+ ER  +++DP+LATG SA  AI  L ++G    ++ F+ L++APEG+  +    P ++I  + +D  L+E
Sbjct:    3 NVHVINHPL-VQHKLTIIRDKNTGTKAFRELVDEVATLMAYEITRDMELEDIQVETPLQTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGLYRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGA--RNMKFMCLVAAPEGVKALQDAHPDVEIYVAGLDEKLDE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LISMO (Uracil phosphoribosyltransferase OS=Listeria monocytogenes GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 1
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            NV+VI     ++   T+IRD+      F    D +  L+       +   + QV TP  +        KKL  V I+R+G  M++ +             ++RD D  + + Y  KLP+D+ ER  +++DP+LATG SA  AI  L ++G    ++ F+ L++APEG+  +    P ++I  + +D  L+E
Sbjct:    3 NVHVINHPL-VQHKLTIIRDKNTGTKAFRELVDEVATLMAYEITRDMELEDIQVETPLQTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGLYRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGA--RNMKFMCLVAAPEGVKALQDAHPDVEIYVAGLDEKLDE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LISMH (Uracil phosphoribosyltransferase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 1
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            NV+VI     ++   T+IRD+      F    D +  L+       +   + QV TP  +        KKL  V I+R+G  M++ +             ++RD D  + + Y  KLP+D+ ER  +++DP+LATG SA  AI  L ++G    ++ F+ L++APEG+  +    P ++I  + +D  L+E
Sbjct:    3 NVHVINHPL-VQHKLTIIRDKNTGTKAFRELVDEVATLMAYEITRDMELEDIQVETPLQTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGLYRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGA--RNMKFMCLVAAPEGVKALQDAHPDVEIYVAGLDEKLDE 190          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_LACPL5.320e-1328.81Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_BACCL5.320e-1330.68Uracil phosphoribosyltransferase OS=Bacillus caldo... [more]
UPP_SYMTH6.948e-1330.39Uracil phosphoribosyltransferase OS=Symbiobacteriu... [more]
UPP_STRMU6.948e-1334.25Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_STRA56.948e-1329.55Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_STRA36.948e-1329.55Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_STRA16.948e-1329.55Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_LISW66.948e-1329.32Uracil phosphoribosyltransferase OS=Listeria welsh... [more]
UPP_LISMO6.948e-1329.32Uracil phosphoribosyltransferase OS=Listeria monoc... [more]
UPP_LISMH6.948e-1329.32Uracil phosphoribosyltransferase OS=Listeria monoc... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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