CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACF3 (Uracil phosphoribosyltransferase OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=upp PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.072e-17
Identity = 56/177 (31.64%), Postives = 92/177 (51.98%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T+IRD+ +    F      +  L+      ++P  + +V TP           KK+  + I+R+G  M + +             ++RD +  K   Y  KLPNDI+ER + ++DP+LATG SA  AI+ L ++G  E ++ F  L++APEG+  V + FP + I T+ +D  LNE+
Sbjct:   17 TMIRDKRVGTKVFRETVKEISTLMAYEVSRNMPLKDVEVETPIAKTTQKELAGKKVAIIPILRAGLGMVDGMTELIPAAKIGFIGMYRDEETLKPHEYFVKLPNDITERQLFIVDPMLATGGSAVMAIEALKKRGCQEKNMKFACLVAAPEGVKAVQEAFPDVDIYTAGLDERLNED 193          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_PEDPA (Uracil phosphoribosyltransferase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=upp PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 57/177 (32.20%), Postives = 92/177 (51.98%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            TLIRD+  S  +F    + +  L+       +P  + ++ TP G         KK+  V I+R+G  M + +             ++RD +  K   Y  KLP+DISER V ++DP+LATG SA  A+  L ++G  +  I F +L++APEG+  + +  P + I T+ +D  LNE+
Sbjct:   17 TLIRDKHCSTKEFREIVNEISTLMAYEVSRDMPLMDVEIETPIGKSIQKQISGKKVAIVPILRAGLGMVDGMAELLPVARIGHIGMYRDEETLKPTEYFVKLPSDISERQVFVVDPMLATGGSAIMAVDALKKRGAKD--IRFCSLVAAPEGVKALQEAHPDIDIYTAALDEKLNED 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_OCEIH (Uracil phosphoribosyltransferase OS=Oceanobacillus iheyensis GN=upp PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = 1
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            NV+V      I+   T IRD+     +F    D +  L+       LP  E  V TP  +  + V   KKL  V I+R+G  M + +R            ++RD +  K +  Y KLPNDI ER ++++DP+LATG SAN AI  + ++G    +I  + LI+APEG+  V +  P + I  + +D  L++
Sbjct:    3 NVFVFDHPL-IQHKLTYIRDKNTGTKEFRELVDEVAMLMAFEITRDLPVKEVNVDTPVTTAPSKVLAGKKLGLVPILRAGLGMVDGVRKLIPAAKVGHVGLYRDPETFKPVEYYVKLPNDIEEREIIVIDPMLATGGSANDAIAAIKKRGA--KNIRLMCLIAAPEGVEVVKEAHPDVDIYLAAMDERLDD 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACRJ (Uracil phosphoribosyltransferase OS=Lactobacillus reuteri (strain JCM 1112) GN=upp PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.936e-16
Identity = 54/177 (30.51%), Postives = 90/177 (50.85%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T+IRD+ +    F      +  L+       +P  + ++ TP           KK+  + I+R+G  M + +             ++RD +  K   Y  KLPNDI+ER + ++DP+LATG SA  AI+ L ++G  E ++ F  L++APEG+  V   +P + I T+ +D  LNE+
Sbjct:   17 TMIRDKNVGTKFFRETVKEISTLMAYEVARDMPLKDVEIETPIAKTTQKELAGKKVAIIPILRAGIGMVDGMTDLIPAAKIGFIGMYRDEETLKPHEYFVKLPNDITERQLFIVDPMLATGGSAMMAIEALKKRGCSEKNMKFACLVAAPEGVKAVRDAYPDVDIYTAGLDDHLNED 193          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACRD (Uracil phosphoribosyltransferase OS=Lactobacillus reuteri (strain DSM 20016) GN=upp PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.936e-16
Identity = 54/177 (30.51%), Postives = 90/177 (50.85%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T+IRD+ +    F      +  L+       +P  + ++ TP           KK+  + I+R+G  M + +             ++RD +  K   Y  KLPNDI+ER + ++DP+LATG SA  AI+ L ++G  E ++ F  L++APEG+  V   +P + I T+ +D  LNE+
Sbjct:   17 TMIRDKNVGTKFFRETVKEISTLMAYEVARDMPLKDVEIETPIAKTTQKELAGKKVAIIPILRAGIGMVDGMTDLIPAAKIGFIGMYRDEETLKPHEYFVKLPNDITERQLFIVDPMLATGGSAMMAIEALKKRGCSEKNMKFACLVAAPEGVKAVRDAYPDVDIYTAGLDDHLNED 193          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_DICTD (Uracil phosphoribosyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=upp PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.714e-16
Identity = 61/176 (34.66%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T +RD+     +F      +  L++     +LP  E +V TP G     V   K L  V I+R+G  M   +             ++RD +  K +  Y KLP DI +R V+++DP+LATG SA  AI +L  KGV   +I F+ +ISAPEGI  +    P + I T+ ID  LN+
Sbjct:   15 TKLRDKSTEPKEFRELLSEISSLMLYEVTRNLPTKEVEVETPLGIAKGKVLNNKDLAIVPILRAGLVMAEGMLRILPSAKVGHIGLYRDPNTLKPVQYYTKLPEDIDKREVVVVDPMLATGGSAIAAISILKTKGV--KNIKFVCIISAPEGIEALKNSHPDVDIYTAAIDEKLND 188          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_DICT6 (Uracil phosphoribosyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=upp PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 61/176 (34.66%), Postives = 90/176 (51.14%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T +RD+     +F      +  L++     +LP  E +V TP G     V   K L  V I+R+G  M + +             ++RD +  K +  Y KLP DI +R V+++DP+LATG SA  AI +L  KGV +  I F+ +ISAPEGI  +    P + I T+ ID  LN+
Sbjct:   15 TKLRDKNTGPKEFRELLFEISSLMLYEVTKNLPTKEVEVETPLGIAKGKVLDNKDLAIVPILRAGLVMADGMLQILPSAKVGHIGLYRDPETLKPVQYYTKLPEDIDKREVIVVDPMLATGGSAVAAISILKAKGVKD--IKFVCIISAPEGIETLRNSHPDVDIYTAAIDERLND 188          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_GEOSW (Uracil phosphoribosyltransferase OS=Geobacillus sp. (strain WCH70) GN=upp PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 56/176 (31.82%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T IRD+     +F    + +  L+       LP  E ++ TP     + V   KKL  + I+R+G  M + +             ++RD +  K +  Y KLP D+ ER  +++DP+LATG SA +AI  L ++G     I F+ LI+APEG+  V K  P + I  + +D  LN+
Sbjct:   17 TYIRDKNTGTKEFRELVEEVATLMAFEITRDLPLEEVEIETPVSKAKSKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPETLKPVEYYVKLPTDVEERDFIVVDPMLATGGSAVEAINALKKRGA--KSIKFMCLIAAPEGVEAVKKAHPDVDIYIAALDEKLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOBM (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=upp PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 58/176 (32.95%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            LIRD+     DF    + +  L+       L   E ++ TP       +   KK+  V I+R+G  M   + +           ++RD +  K + Y  KLP DI +R V++ DP+LATG SA  AI LL +KG    HI  + L++APEGI  V    P + I  + +D  LNE+
Sbjct:   18 LIRDKNTGSKDFRELVEEVAMLMAYEVTRDLQLKEVEIETPICKTKCKMLSGKKVAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRDVIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOBL (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=upp PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 58/176 (32.95%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            LIRD+     DF    + +  L+       L   E ++ TP       +   KK+  V I+R+G  M   + +           ++RD +  K + Y  KLP DI +R V++ DP+LATG SA  AI LL +KG    HI  + L++APEGI  V    P + I  + +D  LNE+
Sbjct:   18 LIRDKNTGSKDFRELVEEVAMLMAYEVTRDLQLKEVEIETPICKTKCKMLSGKKVAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRDVIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEK 191          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_LACF36.072e-1731.64Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_PEDPA1.036e-1632.20Uracil phosphoribosyltransferase OS=Pediococcus pe... [more]
UPP_OCEIH1.036e-1632.98Uracil phosphoribosyltransferase OS=Oceanobacillus... [more]
UPP_LACRJ3.936e-1630.51Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_LACRD3.936e-1630.51Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_DICTD6.714e-1634.66Uracil phosphoribosyltransferase OS=Dictyoglomus t... [more]
UPP_DICT68.768e-1634.66Uracil phosphoribosyltransferase OS=Dictyoglomus t... [more]
UPP_GEOSW1.145e-1531.82Uracil phosphoribosyltransferase OS=Geobacillus sp... [more]
UPP_CLOBM1.145e-1532.95Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOBL1.145e-1532.95Uracil phosphoribosyltransferase OS=Clostridium bo... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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