CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_SINMW (Uracil phosphoribosyltransferase OS=Sinorhizobium medicae (strain WSM419) GN=upp PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 55/176 (31.25%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++R +  S   F      +  L+       L  T +++ TP       V   KKL   SI+R+G  +   +             ++RD +  + + Y  K P++I+ER V+++DP+LATGNS+  A++ L E+G    +I FL L++APEGI       P + I T+ ID  LNE
Sbjct:   17 TIMRKKETSTAGFRRLLKEISTLLCYEVTRDLELTTERIETPLEETDAPVLEGKKLVFASILRAGNGLLEGMLELVPSARVAHIGVYRDHETLQAVEYFFKAPDNINERLVIVVDPMLATGNSSIAAVEKLKERGA--RNIRFLCLLAAPEGIRNFQGVHPDVPIFTASIDSHLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_PARDP (Uracil phosphoribosyltransferase OS=Paracoccus denitrificans (strain Pd 1222) GN=upp PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 51/176 (28.98%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            TL+RD+  S   F      +  L+       L  T  ++ TP   M       KKL  +SI+R+G  + + +             ++RD +  + +  Y K+P ++  R  +++DP+LATGNS+  AI LL  K     ++ FL L+++PEG+  + +  P + IVT+ +D  L+E
Sbjct:   19 TLMRDKTTSTAGFRRLLREISLLLAYEVTRELEMTTIRIDTPLCEMEAPTLEGKKLALISILRAGNGLMDGILELIPAARVGFIGLYRDPETLQPVQYYSKVPKELDARMTIVVDPMLATGNSSVAAIDLL--KAAGARNLRFLCLLASPEGVERMREAHPDVPIVTAALDERLDE 192          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_OCHA4 (Uracil phosphoribosyltransferase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=upp PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 55/177 (31.07%), Postives = 86/177 (48.59%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++R +  S   F      +  L+       L  T   + TP   M   V   KKL   SI+R+G  +   +             ++RD D  + +  Y K P DI  R ++++DP+LATG+SA  AI  L E+G   ++I FL L++APEGI    +  P + + T+ ID  L+E+
Sbjct:   16 TIMRKKETSTASFRRLLKEISLLLCYEVTRDLELTTMPIETPLMPMDAPVLEGKKLVFASILRAGNGLLEGMLDLVPAARVAHIGLYRDHDTLQPVEYYFKAPEDIVNRLIIVVDPMLATGHSAIAAIDKLKERGA--TNIRFLCLLAAPEGIKRFTEAHPDVDVFTASIDERLDEK 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACH4 (Uracil phosphoribosyltransferase OS=Lactobacillus helveticus (strain DPC 4571) GN=upp PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 56/174 (32.18%), Postives = 83/174 (47.70%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVAL 603
            T+IR +    ++F      +  L+       LP  + ++ TP G         KKL  V I+R+G  M N +             ++RD    K   Y  K P DI+ER  L++DP+LATG SAN AI  L ++GV E ++    L++APEGI  V +  P + I  +  D  L
Sbjct:   17 TIIRRKDTGSNEFRRIVGEIGGLMTYEITRDLPLKDVEIETPMGKTVQKEIAGKKLTIVPILRAGIGMLNGVLDMVPSAKIAVIGMYRDEKTLKPHEYFFKAPKDIAERDCLVVDPMLATGGSANDAIAALKKRGVKEINLAV--LVAAPEGIKAVQEANPDVDIYAAAEDEKL 188          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_RHISN (Uracil phosphoribosyltransferase OS=Rhizobium sp. (strain NGR234) GN=upp PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.681e-12
Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  178 LPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            L  T +++ TP   +   +   KKL   SI+R+G  +   +             ++RD +  + +  Y K P+ ++ER V+++DP+LATGNS+  AI  L E+G    +I FL L++APEGI       P + I T+ ID  LNE+
Sbjct:   48 LELTMERIETPLQEIDAPILEGKKLVFASILRAGNGLLEGMLELVPSARVSHIGVYRDHETLQPVEYYFKAPDSLNERLVIVVDPMLATGNSSIAAIDKLKERGA--KNIRFLCLLAAPEGIRNFHGVHPDVPIFTASIDSHLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRU0 (Uracil phosphoribosyltransferase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=upp PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  178 LPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            LP  + ++ TP           KKL  V I+R+G  M +   +           ++RD +  + + Y  KLP DI +R + ++DP+LATG SA  A+  L ++G    +I F+ L++APEG+  + +  P + I T+ +D  LNE
Sbjct:   48 LPLEDVEIQTPVAKTIQKQLTGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRDEETLEPVEYLVKLPEDIDQRQIFVVDPMLATGGSAILAVDSLKKRGA--GNIKFVCLVAAPEGVKKLQEAHPDVDIYTAALDEKLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOAB (Uracil phosphoribosyltransferase OS=Clostridium acetobutylicum GN=upp PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 54/174 (31.03%), Postives = 82/174 (47.13%), Query Frame = 1
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +RD+     DF    + +  L+       +     ++ TP       +   KK+  V I+R+G  M N +             ++RD    K + Y  KLP DI ER +++ DP+LATG SA  AI LL ++G    +I  + LI APEGI  V +  P + I  + ID  L+E
Sbjct:   19 MRDKKTGSKDFREMVEEVAMLMAYEVTREMQLETVEIETPICITKCKMLAGKKVAIVPILRAGLGMVNGVLKLIPAAKVGHIGLYRDEKTLKPVEYFCKLPQDIEERDIIVTDPMLATGGSAIDAITLLKKRGA--KYIRLMCLIGAPEGIAAVQEAHPDVDIYLASIDEKLDE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRS7 (Uracil phosphoribosyltransferase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=upp PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 49/176 (27.84%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R +  S  DF    + +  L+       LP  + ++ TP           KKL  V I+R+G  M +   +           ++R+ +  + + Y  KLP DI +R + ++DP+LATG SA  A+  L ++G   ++I F+ L++APEG+  + +  P + I T+ +D  LN+
Sbjct:   17 SILRRQDTSTKDFRELVNEIAMLMGYEVSRDLPLEDVEIQTPVAKTVQKQLAGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRNEETLEPVEYLVKLPEDIDQRQIFIVDPMLATGGSAILAVDSLKKRGA--ANIKFVCLVAAPEGVKKLQEAHPDVDIYTAALDERLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STREM (Uracil phosphoribosyltransferase OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=upp PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 49/176 (27.84%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R +  S  DF    + +  L+       LP  + ++ TP           KKL  V I+R+G  M +   +           ++R+ +  + + Y  KLP DI +R + ++DP+LATG SA  A+  L ++G   ++I F+ L++APEG+  + +  P + I T+ +D  LN+
Sbjct:   17 SILRRQDTSTKDFRELVNEIAMLMGYEVSRDLPLEDVEIQTPVAKTVQKQLAGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRNEETLEPVEYLVKLPEDIDQRQIFIVDPMLATGGSAILAVDSLKKRGA--ANIKFVCLVAAPEGVKKLQEAHPDVDIYTAALDERLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRE4 (Uracil phosphoribosyltransferase OS=Streptococcus equi subsp. equi (strain 4047) GN=upp PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 49/176 (27.84%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R +  S  DF    + +  L+       LP  + ++ TP           KKL  V I+R+G  M +   +           ++R+ +  + + Y  KLP DI +R + ++DP+LATG SA  A+  L ++G   ++I F+ L++APEG+  + +  P + I T+ +D  LN+
Sbjct:   17 SILRRQDTSTKDFRELVNEIAMLMGYEVSRDLPLEDVEIQTPVAKTVQKQLAGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRNEETLEPVEYLVKLPEDIDQRQIFIVDPMLATGGSAILAVDSLKKRGA--ANIKFVCLVAAPEGVKKLQEAHPDVDIYTAALDERLND 190          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_SINMW5.881e-1231.25Uracil phosphoribosyltransferase OS=Sinorhizobium ... [more]
UPP_PARDP5.881e-1228.98Uracil phosphoribosyltransferase OS=Paracoccus den... [more]
UPP_OCHA45.881e-1231.07Uracil phosphoribosyltransferase OS=Ochrobactrum a... [more]
UPP_LACH45.881e-1232.18Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_RHISN7.681e-1233.56Uracil phosphoribosyltransferase OS=Rhizobium sp. ... [more]
UPP_STRU01.003e-1131.72Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_CLOAB1.003e-1131.03Uracil phosphoribosyltransferase OS=Clostridium ac... [more]
UPP_STRS71.310e-1127.84Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_STREM1.310e-1127.84Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_STRE41.310e-1127.84Uracil phosphoribosyltransferase OS=Streptococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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