CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_THESQ (Uracil phosphoribosyltransferase OS=Thermotoga sp. (strain RQ2) GN=upp PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 52/176 (29.55%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++RD+     +F      +  L+      HL   E +V TP           K +  V I+R+G  M + +             I+RD +  + +  Y KLP    ++ V LLDP+LATG S+ +AI++L E G  +  I  + LI+APEG+  V +++  +KI  + +D  LN+
Sbjct:   17 TIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPITKTIGYRINDKDVVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPLNDDKEVFLLDPMLATGVSSVKAIEILKENGAKK--ITLVALIAAPEGVEAVERKYKDVKIYVAALDERLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_THEP1 (Uracil phosphoribosyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=upp PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 52/176 (29.55%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++RD+     +F      +  L+      HL   E +V TP           K +  V I+R+G  M + +             I+RD +  + +  Y KLP    ++ V LLDP+LATG S+ +AI++L E G  +  I  + LI+APEG+  V +++  +KI  + +D  LN+
Sbjct:   17 TIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPITKTIGYRINDKDVVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPLNDDKEVFLLDPMLATGVSSVKAIEILKENGAKK--ITLVALIAAPEGVEAVERKYKDVKIYVAALDERLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACGA (Uracil phosphoribosyltransferase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=upp PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 54/174 (31.03%), Postives = 83/174 (47.70%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVAL 603
            T+IR +    ++F      +  L+V      LP    ++ TP G         KKL  V I+R+G  M + +             ++RD +  K   Y  K+P DI ER  +++DP+LATG SAN AI  L ++G    +I    L++APEG+  V +  P + I  +E D  L
Sbjct:   17 TIIRKKDTGTNEFRQIVGEIGGLMVYEMTRDLPLKNVEIETPIGKSTQKELAGKKLVIVPILRAGLGMVDGVLQMIPSAKVGHIGMYRDEETLKPHEYFFKMPPDIEERECIIVDPMLATGGSANMAIGALKKRGA--KNIRLAVLVAAPEGVKAVQEANPDVDIYAAEEDEKL 188          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_AGRVS (Uracil phosphoribosyltransferase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=upp PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  178 LPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            L  T + + TP   M   V   KKL   SI+R+G  +   +             ++RD +  + +  Y K P  +SER V+++DP+LATGNS+  A+  L E+G    ++ F+ L++APEGI    +  P + + T+ ID  LNE
Sbjct:   48 LELTVETIETPMVEMEAPVLEGKKLVFASILRAGNGLLEGMLDLVPSARVSHVGVYRDHETLQAVEYYFKAPESLSERLVIVVDPMLATGNSSIAAVDKLKERGA--VNLRFVCLLAAPEGIKNFREAHPDVHVYTAAIDSHLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_VEREI (Uracil phosphoribosyltransferase OS=Verminephrobacter eiseniae (strain EF01-2) GN=upp PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 57/180 (31.67%), Postives = 87/180 (48.33%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTP----TGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            TL+R +  S + F      L +L+       +P +  Q+ TP    TG M  G    KKL  VSI+R+G    + +             ++RD    + +  Y K+P  I ER  +++DP+LATGNSA   +  L  K +    I F+ L++ PEGI  + +  P + I T+ ID  LNE
Sbjct:   17 TLMRRKDASSNSFRRLLGELSQLMAYEVTRDMPLSPVQIETPLETMTGQMIDG----KKLVLVSILRAGNGFLDGMLNVVPGARVGHIGLYRDPATLQAVEYYFKMPAGIDERDTIVVDPMLATGNSAVACMARL--KQLKPRSIKFVCLLAVPEGIARLQQAHPDVSIFTAAIDRELNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_DESAD (Uracil phosphoribosyltransferase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=upp PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 53/175 (30.29%), Postives = 84/175 (48.00%), Query Frame = 1
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            ++R+ GIS   F   +  + RL+       L    K +    G +       KK+  V I+R+G  M + +              +RD +  + +  Y KL ++I ER  L+LDP+LATG +    I LL + G   ++I  L L++APEGI  + K  P + I T+ ID  LN+
Sbjct:   17 ILREDGISTSRFRALAQEISRLLTYEATKDLATEAKTITGWAGEVEVEEIKGKKITVVPILRAGLGMMDGVLDMVPGARVSVVGFYRDEETLQPVEYYVKLASNIDERIALILDPMLATGGTLMATIDLLKKSGC--TNIKGLFLVAAPEGIEKIVKAHPDVDIYTASIDEKLND 189          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOB8 (Uracil phosphoribosyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=upp PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 50/175 (28.57%), Postives = 83/175 (47.43%), Query Frame = 1
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            ++RD      DF    + +  L+       L   E +V TP       +   KK+  V I+R+G  M + +             ++RD    + + Y  K+P DI+ER ++++DP+LATG SA  A+ +L  +G    ++  + L+ APEGI  + K    + I  + ID  LNE
Sbjct:   18 ILRDEKTGSKDFRKLVEEISMLMAYEVTRDLNTEEVEVKTPVAVTKCKMLSGKKMAVVPILRAGLGMVDGVLNLIPAAKVGHIGLYRDEKTLQPVEYFCKMPQDIAERDIIVVDPMLATGGSAIDALTMLKNRGA--KNLKLMCLVGAPEGIEAIKKAHDDVDIYLASIDEKLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LEGPL (Uracil phosphoribosyltransferase OS=Legionella pneumophila (strain Lens) GN=upp PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 53/176 (30.11%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++R +  S   F      +  L+       L    +++ TP  +M + V   KKL  VSI+R+G  + + +             ++RD    + +  Y KLP    +R V+++DP+LATGNSA  A++ +  K +    I FL L++APEGI       P + I T+ ID  LN+
Sbjct:   19 TIMRKKETSTVKFRTLMHEVSMLLAYEVTRDLEIEYEEIETPLATMQSPVLKGKKLVFVSILRAGNGLLDGMLQLVPTARIGHIGLYRDPKTLEAVEYYFKLPEHTQDRDVIVVDPMLATGNSAIAAVKEV--KALHPKSIKFLCLLAAPEGISNFHGEHPDVPIFTAAIDEQLND 192          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LEGPA (Uracil phosphoribosyltransferase OS=Legionella pneumophila (strain Paris) GN=upp PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 53/176 (30.11%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++R +  S   F      +  L+       L    +++ TP  +M + V   KKL  VSI+R+G  + + +             ++RD    + +  Y KLP    +R V+++DP+LATGNSA  A++ +  K +    I FL L++APEGI       P + I T+ ID  LN+
Sbjct:   19 TIMRKKETSTVKFRTLMHEVSMLLAYEVTRDLEIEYEEIETPLATMQSPVLKGKKLVFVSILRAGNGLLDGMLQLVPTARIGHIGLYRDPKTLEAVEYYFKLPEHTQDRDVIVVDPMLATGNSAIAAVKEV--KALHPKSIKFLCLLAAPEGISNFHGEHPDVPIFTAAIDEQLND 192          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_DESMR (Uracil phosphoribosyltransferase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=upp PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 52/175 (29.71%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            L+R+  IS  +F   ++ + RL+       LP  +K +    G +       KK+  V I+R+G  M + +             ++R+ +  + +  Y KL   I +RH ++LDP+LATG +    I LL E G     I+ L L+ APEG+  + K  P +++ T+ ID  LNE
Sbjct:   17 LLRENNISTKNFRELANEIGRLLTYEATKSLPTEKKTIHGWAGPVEVDQLVGKKITVVPILRAGLGMMDGVVDMIPGVKVSVVGMYRNEETLEPVRYYVKLAKKIHKRHAMILDPMLATGGTLVATINLLKEAGC--RRIMGLFLVCAPEGLARLEKEHPDVEVYTAAIDERLNE 189          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_THESQ1.711e-1129.55Uracil phosphoribosyltransferase OS=Thermotoga sp.... [more]
UPP_THEP11.711e-1129.55Uracil phosphoribosyltransferase OS=Thermotoga pet... [more]
UPP_LACGA1.711e-1131.03Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_AGRVS1.711e-1133.10Uracil phosphoribosyltransferase OS=Agrobacterium ... [more]
UPP_VEREI2.919e-1131.67Uracil phosphoribosyltransferase OS=Verminephrobac... [more]
UPP_DESAD2.919e-1130.29Uracil phosphoribosyltransferase OS=Desulfovibrio ... [more]
UPP_CLOB82.919e-1128.57Uracil phosphoribosyltransferase OS=Clostridium be... [more]
UPP_LEGPL3.812e-1130.11Uracil phosphoribosyltransferase OS=Legionella pne... [more]
UPP_LEGPA3.812e-1130.11Uracil phosphoribosyltransferase OS=Legionella pne... [more]
UPP_DESMR3.812e-1129.71Uracil phosphoribosyltransferase OS=Desulfovibrio ... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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