CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_EUBR3 (Uracil phosphoribosyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=upp PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 45/145 (31.03%), Postives = 73/145 (50.34%), Query Frame = 1
Query:  178 LPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            L  T+ ++ TP           KKL  V I+R+G  M   +             ++RD +  + + Y  KLP D + R V ++DP+LATG SA  A+ +L ++GV   H  F+ +I+APEG+  + +  P + +    +D  LNE
Sbjct:   48 LELTDVEIETPICKATVKELKGKKLAVVPILRAGLGMVEGMLELIPAAKVGHIGMYRDPETAEPIEYYCKLPADCANREVFVVDPMLATGGSAVAALDMLKKRGVKNIH--FMCIIAAPEGVKRLTEAHPDVDVYIGALDDHLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STACT (Uracil phosphoribosyltransferase OS=Staphylococcus carnosus (strain TM300) GN=upp PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 51/175 (29.14%), Postives = 84/175 (48.00%), Query Frame = 1
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            IRD      +F    D +  L+       L   + ++ TP           KKL  V I+R+G  M   + +           ++RD +  + + Y  KLP DI ER ++++DP+LATG SA +AI  L  +G    +I F+ LI+A EG+  + +  P + I  + +D  LN++
Sbjct:   19 IRDANTGTKEFRELVDEVGMLMAYEVTRDLELQDVEIETPVTKTTAKRLSGKKLAFVPILRAGLGMTQGILSLIPAARVGHVGLYRDPETLEAVEYFVKLPQDIEEREIVVVDPMLATGASAIEAINSLKNRGA--KNIRFMCLIAALEGVEKLQEAHPDVDIFIAALDEKLNDK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_PSEPK (Uracil phosphoribosyltransferase OS=Pseudomonas putida (strain KT2440) GN=upp PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 57/181 (31.49%), Postives = 86/181 (47.51%), Query Frame = 1
Query:   70 IRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            IR    L+R   IS  +F   +  +  L+       LP    ++    G +       KK+  V I+R+G  M + + +           + R+ +  +   Y EKL  DI++R  L++DP+LATG S    I LL + G  E  I  + L++APEGI  V K  P +KI T+ ID  LNE
Sbjct:   11 IRHKLGLMRRADISTKNFRELAQEVGALLTYEATQDLPLETYEIDGWCGKVSVEKIAGKKITVVPILRAGIGMLDGVLSLIPGAKVSAVGVARNEETLEAHTYLEKLAPDINQRLALIIDPMLATGGSMVATIDLLKKAGCKE--IRAMVLVAAPEGIEVVEKAHPDVKIYTASIDQRLNE 189          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_PSEPG (Uracil phosphoribosyltransferase OS=Pseudomonas putida (strain GB-1) GN=upp PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 57/181 (31.49%), Postives = 86/181 (47.51%), Query Frame = 1
Query:   70 IRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            IR    L+R   IS  +F   +  +  L+       LP    ++    G +       KK+  V I+R+G  M + + +           + R+ +  +   Y EKL  DI++R  L++DP+LATG S    I LL + G  E  I  + L++APEGI  V K  P +KI T+ ID  LNE
Sbjct:   11 IRHKLGLMRRADISTKNFRELAQEVGALLTYEATQDLPLETYEIDGWCGKVSVEKIAGKKITVVPILRAGIGMLDGVLSLIPGAKVSAVGVARNEETLEAHTYLEKLAPDINQRLALIIDPMLATGGSMVATIDLLKKAGCKE--IRAMVLVAAPEGIEVVEKAHPDVKIYTASIDQRLNE 189          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_PSEP1 (Uracil phosphoribosyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=upp PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 57/181 (31.49%), Postives = 86/181 (47.51%), Query Frame = 1
Query:   70 IRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            IR    L+R   IS  +F   +  +  L+       LP    ++    G +       KK+  V I+R+G  M + + +           + R+ +  +   Y EKL  DI++R  L++DP+LATG S    I LL + G  E  I  + L++APEGI  V K  P +KI T+ ID  LNE
Sbjct:   11 IRHKLGLMRRADISTKNFRELAQEVGALLTYEATQDLPLETYEIDGWCGKVSVEKIAGKKITVVPILRAGIGMLDGVLSLIPGAKVSAVGVARNEETLEAHTYLEKLAPDINQRLALIIDPMLATGGSMVATIDLLKKAGCKE--IRAMVLVAAPEGIEVVEKAHPDVKIYTASIDQRLNE 189          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_MYCA5 (Uracil phosphoribosyltransferase OS=Mycoplasma arthritidis (strain 158L3-1) GN=upp PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 47/159 (29.56%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  136 DRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            D +  L+V   + +     K+V+TP G    G  F +++  + I+R+G  M   + A           I+RD    + + Y  K+P+   + +++++DP+LATG SAN AI  LV  G   S+I  + L+   +GI  + K  P++ I  +  D  LNE
Sbjct:   32 DEIASLMVYEVMRNYQTKPKKVITPIGVETIGKSFDREVVIIPILRAGLGMMQGILAMVPEARVGHIGIYRDEKTFQPIDYFFKIPDVPKDSYIMVVDPMLATGVSANDAINKLVNLGF--SNIKLICLVGVQKGIDLIQKNHPNVDIYLASQDEKLNE 188          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LEGPH (Uracil phosphoribosyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=upp PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 52/176 (29.55%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++R +  S   F      +  L+       L    +++ TP  +M + V   KKL  VSI+R+G  + + +             ++RD    + +  Y KLP    +R V+++DP+LATGNSA  A++ +  K +    I FL L+++PEGI       P + I T+ ID  LN+
Sbjct:   19 TIMRKKETSTVKFRTLMHEVSMLLAYEVTRDLEIEYEEIETPLATMQSPVLKGKKLVFVSILRAGNGLLDGMLQLVPTARIGHIGLYRDPKTLEAVEYYFKLPEHTQDRDVIVVDPMLATGNSAIAAVKEV--KALHPKSIKFLCLLASPEGISNFHGEHPDVPIFTAAIDEQLND 192          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LEGPC (Uracil phosphoribosyltransferase OS=Legionella pneumophila (strain Corby) GN=upp PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 52/176 (29.55%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++R +  S   F      +  L+       L    +++ TP  +M + V   KKL  VSI+R+G  + + +             ++RD    + +  Y KLP    +R V+++DP+LATGNSA  A++ +  K +    I FL L+++PEGI       P + I T+ ID  LN+
Sbjct:   19 TIMRKKETSTVKFRTLMHEVSMLLAYEVTRDLEIEYEEIETPLATMQSPVLKGKKLVFVSILRAGNGLLDGMLQLVPTARIGHIGLYRDPKTLEAVEYYFKLPEHTQDRDVIVVDPMLATGNSAIAAVKEV--KALHPKSIKFLCLLASPEGISNFHGEHPDVPIFTAAIDEQLND 192          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_FERNB (Uracil phosphoribosyltransferase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=upp PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 53/190 (27.89%), Postives = 88/190 (46.32%), Query Frame = 1
Query:   43 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +YV+     I+   T++R +     +F      +  L+      H+P  E +V TP           K +  + I+R+G  M + +             I+RD +  K +  Y K P    +  + +LDP+LATG SA  AI  + E G  +  I F++LIS+PEG+  + K  P + I T+ +D  LN+
Sbjct:    2 LYVVDHPL-IKHKLTIMRKKETGPKEFRELLREITLLITYEATRHIPVYELEVETPLEKTKGYYINDKDIVVIPILRAGLGMVDGILELLPNASVGHIGIYRDPETLKAVDYYFKTPKLHDKSEIFILDPMLATGVSAIDAITKVKELGGKQ--ITFISLISSPEGVKAIEKAHPDVNIYTASLDRELND 188          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BORPE (Uracil phosphoribosyltransferase OS=Bordetella pertussis GN=upp PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 54/181 (29.83%), Postives = 84/181 (46.41%), Query Frame = 1
Query:   70 IRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            IR    ++R   +S   F   S  +  L+       +P     V    G++       KK+  V I+R+G  M + + +           + R+ +  +   Y E+L  ++ +R  L++DP+LATG S   AI +L   G  E  I  L L+SAPEGI  V K  P ++I T+ ID  LNE
Sbjct:   11 IRHKLGIMRRADLSTKSFRELSQEVAALLTYEATKDMPLAPASVEGWCGTVEVDKITGKKVTVVPILRAGIGMLDGVLSLIPGAKVSVVGVARNEETLQAHTYLERLVGELDQRLALIVDPMLATGGSMVAAIDMLKRAGCRE--IRALTLVSAPEGIDAVLKAHPDVQIYTASIDQGLNE 189          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_EUBR34.979e-1131.03Uracil phosphoribosyltransferase OS=Eubacterium re... [more]
UPP_STACT8.493e-1129.14Uracil phosphoribosyltransferase OS=Staphylococcus... [more]
UPP_PSEPK8.493e-1131.49Uracil phosphoribosyltransferase OS=Pseudomonas pu... [more]
UPP_PSEPG8.493e-1131.49Uracil phosphoribosyltransferase OS=Pseudomonas pu... [more]
UPP_PSEP18.493e-1131.49Uracil phosphoribosyltransferase OS=Pseudomonas pu... [more]
UPP_MYCA58.493e-1129.56Uracil phosphoribosyltransferase OS=Mycoplasma art... [more]
UPP_LEGPH8.493e-1129.55Uracil phosphoribosyltransferase OS=Legionella pne... [more]
UPP_LEGPC8.493e-1129.55Uracil phosphoribosyltransferase OS=Legionella pne... [more]
UPP_FERNB8.493e-1127.89Uracil phosphoribosyltransferase OS=Fervidobacteri... [more]
UPP_BORPE8.493e-1129.83Uracil phosphoribosyltransferase OS=Bordetella per... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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