CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOBK (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=upp PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 58/176 (32.95%), Postives = 86/176 (48.86%), Query Frame = 1 
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            LIRD+     DF    + +  L+       L   E ++ TP       +   KK+  V I+R+G  M   + +           ++RD +  K + Y  KLP DI +R V++ DP+LATG SA  AI LL +KG    HI  + L++APEGI  V    P + I  + +D  LNE+
Sbjct:   18 LIRDKNTGSKDFRELVEEVAMLMAYEVTRDLQLKEVEIETPICKTKCKMLSGKKVAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRDVIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEK 191
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOBJ (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=upp PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 58/176 (32.95%), Postives = 86/176 (48.86%), Query Frame = 1 
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            LIRD+     DF    + +  L+       L   E ++ TP       +   KK+  V I+R+G  M   + +           ++RD +  K + Y  KLP DI +R V++ DP+LATG SA  AI LL +KG    HI  + L++APEGI  V    P + I  + +D  LNE+
Sbjct:   18 LIRDKNTGSKDFRELVEEVAMLMAYEVTRDLQLKEVEIETPICKTKCKMLSGKKVAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRDVIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEK 191
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOBH (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=upp PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 58/176 (32.95%), Postives = 86/176 (48.86%), Query Frame = 1 
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            LIRD+     DF    + +  L+       L   E ++ TP       +   KK+  V I+R+G  M   + +           ++RD +  K + Y  KLP DI +R V++ DP+LATG SA  AI LL +KG    HI  + L++APEGI  V    P + I  + +D  LNE+
Sbjct:   18 LIRDKNTGSKDFRELVEEVAMLMAYEVTRDLQLKEVEIETPICKTKCKMLSGKKVAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRDVIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEK 191
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOB6 (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=upp PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 58/176 (32.95%), Postives = 86/176 (48.86%), Query Frame = 1 
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            LIRD+     DF    + +  L+       L   E ++ TP       +   KK+  V I+R+G  M   + +           ++RD +  K + Y  KLP DI +R V++ DP+LATG SA  AI LL +KG    HI  + L++APEGI  V    P + I  + +D  LNE+
Sbjct:   18 LIRDKNTGSKDFRELVEEVAMLMAYEVTRDLQLKEVEIETPICKTKCKMLSGKKVAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRDVIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEK 191
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOB1 (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=upp PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 58/176 (32.95%), Postives = 86/176 (48.86%), Query Frame = 1 
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            LIRD+     DF    + +  L+       L   E ++ TP       +   KK+  V I+R+G  M   + +           ++RD +  K + Y  KLP DI +R V++ DP+LATG SA  AI LL +KG    HI  + L++APEGI  V    P + I  + +D  LNE+
Sbjct:   18 LIRDKNTGSKDFRELVEEVAMLMAYEVTRDLQLKEVEIETPICKTKCKMLSGKKVAIVPILRAGLGMVGGMTSLIPAAKVGHIGLYRDEETLKPVEYFCKLPQDIGDRDVIVTDPMLATGGSAKDAITLLKQKGA--KHIRLMCLVAAPEGIKEVMDEHPDVDIYVASVDEKLNEK 191
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURP8 (Uracil phosphoribosyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=upp PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.496e-15
Identity = 58/192 (30.21%), Postives = 95/192 (49.48%), Query Frame = 1 
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   + +RDR  S   F      +  L+      +LP T ++V TP   +   V   KKL  V ++R+G  M + L             ++RD D+       +LP D+ +R  +L DP++ATG SA  AI +L  +GV   +I FL L++APEG+       P +K+  + +D  LNE
Sbjct:    7 FPNLFILDHPL-IQHKLSHMRDRDTSTRTFRELLREITLLMGYEITRNLPMTTRRVSTPLVDIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRDDDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAVHAIDVLKRRGVAGENISFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLNE 196
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_THET8 (Uracil phosphoribosyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=upp PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 1 
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +RD+     DF   ++ +  L+    +  L   E  V TP       V   KKL  V+I+R+G  M   +             ++RD ++   +  Y KLP DI+ER   LLDP+LATG SA+ A+ LL E+G   + +  + +++APEG+  + K  P  ++V + ID  LN+
Sbjct:   18 LRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGA--TGVKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLND 189
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_THET2 (Uracil phosphoribosyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=upp PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 1 
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +RD+     DF   ++ +  L+    +  L   E  V TP       V   KKL  V+I+R+G  M   +             ++RD ++   +  Y KLP DI+ER   LLDP+LATG SA+ A+ LL E+G   + +  + +++APEG+  + K  P  ++V + ID  LN+
Sbjct:   18 LRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGA--TGVKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLND 189
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRSY (Uracil phosphoribosyltransferase OS=Streptococcus suis (strain 05ZYH33) GN=upp PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 56/177 (31.64%), Postives = 91/177 (51.41%), Query Frame = 1 
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            +++R    S  DF    + +  L+    L  LP  + ++ TP           KKL  V I+R+G  M + L +           ++RD +  + + Y  KLP DI +RH+ ++DP+LATG SA  A+  L ++G   S+I F+ L+SAPEG+  +    P + I T+ +D  LNE+
Sbjct:   17 SILRRTSTSTKDFRELVNEIAMLMGYEVLRDLPLEDVEIETPITKTVQKQIAGKKLAIVPILRAGVGMVDGLLSLVPAAKVGHIGMYRDEETLQPVEYLVKLPEDIDQRHIFVVDPMLATGGSAILAVDSLKKRGA--SNIKFVALVSAPEGVKALQDAHPDIDIYTAALDEKLNEK 191
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOD6 (Uracil phosphoribosyltransferase OS=Clostridium difficile (strain 630) GN=upp PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 59/176 (33.52%), Postives = 87/176 (49.43%), Query Frame = 1 
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            TL+RD+     DF      +  L+       +P  + ++ TP     + V   KKL  + I+R+G  M + L +           ++RD +  K + Y  KLP DI ER ++++DP+LATG SA  AI LL  KG     I   NL++APEGI  V K    + I  + +D  LNE
Sbjct:   17 TLMRDKNTGSKDFRELLTEIAMLMGYEITKDIPLKDVEIETPIQKTSSKVVAGKKLAIIPILRAGLGMVDGLVSLMPAAKVGHVGLYRDPETLKPVEYYCKLPQDIGERDIIVVDPMLATGGSAVAAIDLLKSKGA--KSIKLANLVAAPEGIAEVQKYHDDVDIYVASVDERLNE 190
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_CLOBK1.145e-1532.95Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOBJ1.145e-1532.95Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOBH1.145e-1532.95Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOB61.145e-1532.95Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOB11.145e-1532.95Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_BURP81.496e-1530.21Uracil phosphoribosyltransferase OS=Burkholderia p... [more]
UPP_THET81.953e-1531.61Uracil phosphoribosyltransferase OS=Thermus thermo... [more]
UPP_THET21.953e-1531.61Uracil phosphoribosyltransferase OS=Thermus thermo... [more]
UPP_STRSY1.953e-1531.64Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_CLOD61.953e-1533.52Uracil phosphoribosyltransferase OS=Clostridium di... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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