CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURTA (Uracil phosphoribosyltransferase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=upp PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 57/192 (29.69%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T K+V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  AI +L  +GVP   I+FL L++APEG+       P +K+  + +D  L++
Sbjct:    7 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERIMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDD 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BACCN (Uracil phosphoribosyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=upp PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.953e-15
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T IRD+     +F    D +  L+       LP  E ++ TP     T V   KKL  + I+R+G  M + +             ++RD    + +  Y KLP D+ ER  ++LDP+LATG SA +AI  L ++G    HI  + +++APEG+  V +  P + I  + +D  LN+
Sbjct:   17 TYIRDKNTGTKEFRELVDEVASLMAFEITRDLPLEEIEIETPVSKAKTKVIAGKKLGLIPILRAGLGMVDGILKLIPAAKVGHIGLYRDPKTLQPVEYYVKLPTDVEERDFIVLDPMLATGGSAAEAINSLKKRGA--KHIKLMCIVAAPEGVKVVQEEHPDVDIYVAALDEKLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_DEIRA (Uracil phosphoribosyltransferase OS=Deinococcus radiodurans GN=upp PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 59/176 (33.52%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDN-GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +L+RD      +F   +  L  L+    +  L     +  TP       +   KKL  V+I+R+G  M +A+             ++RD  +      Y KLP DI+ER V L DP+LATG SAN AIQ L + G     I  + +++APEGIH V +  P + IVT+ +D  LN+
Sbjct:   18 SLMRDERTGVKEFRELAGELSLLLAYEAMRDLEVEPVRFATPIEEGDFPMLSGKKLALVAILRAGLVMTDAIVTLVPAAKVGHIGMYRDPQSLAPVAYYSKLPADIAERRVFLTDPMLATGGSANAAIQNLKDAGA--QSIKLMTILAAPEGIHAVQQAHPDVDIVTASVDSRLND 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURVG (Uracil phosphoribosyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=upp PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 55/192 (28.65%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T ++V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  A+ +L  + VP ++I+F+ L++APEG+       P +K+  + +D  LNE
Sbjct:    7 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTRRVATPLVEVDAPVIAGKKLAIVPVLRAGIGMSDGLLDLVPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRVFILCDPMVATGYSAVHAVDVLKRRNVPAANIVFVALVAAPEGVQVFQDAHPDVKLYVASLDSHLNE 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURP6 (Uracil phosphoribosyltransferase OS=Burkholderia pseudomallei (strain 668) GN=upp PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 56/192 (29.17%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T K+V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  AI +L  +GVP   ++FL L++APEG+       P +K+  + +D  L++
Sbjct:    7 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRANDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDD 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURM1 (Uracil phosphoribosyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=upp PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 56/192 (29.17%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T K+V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  A+ +L  + VP ++I+F+ L++APEG+       P +K+  + +D  LNE
Sbjct:    7 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLDLIPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAVHAVDVLKRRNVPAANIMFVALVAAPEGVQVFQDAHPDVKLFVASLDSHLNE 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BACLD (Uracil phosphoribosyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=upp PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 59/177 (33.33%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T IRD      +F    D +  L+       LP  E  V TP     + V   KKL  V I+R+G  M + +             ++RD +  K +  Y KLP+D+ ER  +++DP+LATG SA +A+  L ++G    +I F+ LI+APEG+  V K  P + I  + +D  LNE+
Sbjct:   17 TYIRDVKTGTKEFRELVDEVATLMAFEITRDLPLEEVNVETPVQMAKSNVIAGKKLGVVPILRAGLGMVDGILKLIPAAKVGHVGLYRDPETLKPVEYYVKLPSDVEEREFIVVDPMLATGGSAVEALNSLKKRGA--KNIRFMCLIAAPEGVDEVQKHHPDVDIYIAALDEKLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACBA (Uracil phosphoribosyltransferase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=upp PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 55/177 (31.07%), Postives = 91/177 (51.41%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T+IR++      F    + +  L+       +P  +K + TP   M       KK+  V I+R+G  M + +             ++RD +  +   Y  KLP+DI +R V ++DP+LATG SA  AI  L ++G   S+I F+ L+SAPEG+  + ++ P + I T+ +D  LNE+
Sbjct:   17 TIIRNKDCGTRSFREVVNEISTLMAYEVSRDMPLQDKTIETPVAKMTAKELAGKKVAIVPILRAGIGMVDGILELIPAAKVGHIGMYRDEETLQPHEYFVKLPSDIGQRQVFVVDPMLATGGSAIMAIDALKKRGA--SNIKFVCLVSAPEGVKALREKHPDIDIYTAALDDRLNED 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_HELMI (Uracil phosphoribosyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=upp PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 57/176 (32.39%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            + IR +     +F    + +  L+       LP  E +V TP     T V   KKL  V+I+R+G  M N               ++RD    + + Y  KLP D++ER ++++DP+LATG SA+ A+ LL +KG    HI  + LI+APEG+  V +  P + I  + +D  LN+
Sbjct:   17 SFIRSKNTGSKEFRELVEEVAMLMAYEVTRELPLVETEVETPVAVAKTKVLAGKKLGVVAILRAGLGMINGFVKLIPAAKVGHVGLYRDPKTLEPVEYYCKLPPDVAERDMIVIDPMLATGGSASAALTLLKQKGA--RHIKLVVLIAAPEGVSRVEQDHPDVDIYAAALDPCLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURPS (Uracil phosphoribosyltransferase OS=Burkholderia pseudomallei GN=upp PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 56/192 (29.17%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T K+V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  AI +L  +GVP   ++FL L++APEG+       P +K+  + +D  L++
Sbjct:    7 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDD 196          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_BURTA1.953e-1529.69Uracil phosphoribosyltransferase OS=Burkholderia t... [more]
UPP_BACCN1.953e-1531.25Uracil phosphoribosyltransferase OS=Bacillus cereu... [more]
UPP_DEIRA2.551e-1533.52Uracil phosphoribosyltransferase OS=Deinococcus ra... [more]
UPP_BURVG2.551e-1528.65Uracil phosphoribosyltransferase OS=Burkholderia v... [more]
UPP_BURP62.551e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia p... [more]
UPP_BURM12.551e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia m... [more]
UPP_BACLD2.551e-1533.33Uracil phosphoribosyltransferase OS=Bacillus liche... [more]
UPP_LACBA3.332e-1531.07Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_HELMI3.332e-1532.39Uracil phosphoribosyltransferase OS=Heliobacterium... [more]
UPP_BURPS3.332e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
back to top