CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURP1 (Uracil phosphoribosyltransferase OS=Burkholderia pseudomallei (strain 1710b) GN=upp PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 56/192 (29.17%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T K+V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  AI +L  +GVP   ++FL L++APEG+       P +K+  + +D  L++
Sbjct:    7 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDD 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURP0 (Uracil phosphoribosyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=upp PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 56/192 (29.17%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T K+V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  AI +L  +GVP   ++FL L++APEG+       P +K+  + +D  L++
Sbjct:    7 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDD 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURMS (Uracil phosphoribosyltransferase OS=Burkholderia mallei (strain SAVP1) GN=upp PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 56/192 (29.17%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T K+V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  AI +L  +GVP   ++FL L++APEG+       P +K+  + +D  L++
Sbjct:    7 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDD 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURMA (Uracil phosphoribosyltransferase OS=Burkholderia mallei GN=upp PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 56/192 (29.17%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T K+V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  AI +L  +GVP   ++FL L++APEG+       P +K+  + +D  L++
Sbjct:    7 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDD 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURM9 (Uracil phosphoribosyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=upp PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 56/192 (29.17%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T K+V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  AI +L  +GVP   ++FL L++APEG+       P +K+  + +D  L++
Sbjct:    7 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDD 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURM7 (Uracil phosphoribosyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=upp PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 56/192 (29.17%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN++++     I+   T +RD+  S   F      +  L+      +LP T K+V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  AI +L  +GVP   ++FL L++APEG+       P +K+  + +D  L++
Sbjct:    7 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDD 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BACHD (Uracil phosphoribosyltransferase OS=Bacillus halodurans GN=upp PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T IRD+     +F    D +  L+       LP  E  V TP G   +     KKL  V I+R+G  M + +             ++RD +  + +  Y KLP D+ ER ++++DP+LATG SA +AI  L ++G   + I  + LI+APEG+  V +  P + I  + +D  LNE+
Sbjct:   17 TYIRDKSTGTKEFRELVDEVAALMAFEITRDLPLQEVTVETPVGPATSKKIAGKKLGLVPILRAGLGMVDGILRMIPAAKVGHVGLYRDPETLQPVEYYVKLPTDVEERELIVIDPMLATGGSAVEAINCLKKRGA--TSIKLMCLIAAPEGVEVVKEAHPDVDIYLAALDEKLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_ALKMQ (Uracil phosphoribosyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=upp PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 55/176 (31.25%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            TLIRD+     DF      +  L+      +L   E ++ TP G   + V   +KL  V I+R+G  M + +             ++RD +  + + Y  KLP D+ ER +++LDP+LATG SAN  ++ + ++GV    ++   ++S PEGI  V K  P + I  + ID  LN+
Sbjct:   17 TLIRDKNTGSKDFRDLVKEISLLMGYEVTRNLSLQEIEIETPVGVTKSKVISGRKLGIVPILRAGLGMVDGILQLIPAAKVGHVGLYRDPETLEPVEYYCKLPVDVQEREIIVLDPMLATGGSANATLKAIKDRGVANMKLVC--IVSCPEGIAAVQKAHPDVDIYVAAIDEKLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: URK1_SCHPO (Uridine kinase OS=Schizosaccharomyces pombe GN=urk1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 51/186 (27.42%), Postives = 91/186 (48.92%), Query Frame = 1
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIH-RDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEID 594
            N+  ++ T +I  + T++ ++     D  F+  R+  +++      L + +K +    G+ + G+   K+LCGVS++RSG ++E AL            L+          L Y KLP  I+  +V+L+   L T      A Q+LV+ GVPE +II +  +   E I  +   FP + IVT+ ++
Sbjct:  250 NLVQLKITPEISAIRTILINKNTHPDDLQFFLSRIGTMLMNLAGDSLAYEKKTITLHNGNQWEGLQMAKELCGVSVLRSGGTLETALCRQFPTVCLGKILVQINKVTQEPTLHYHKLPRGIATMNVVLMASHLTTHADVLMATQILVDFGVPEENIIIVVYVCYSESIKALAYIFPKVTIVTAFLE 435          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOPS (Uracil phosphoribosyltransferase OS=Clostridium perfringens (strain SM101 / Type A) GN=upp PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 58/174 (33.33%), Postives = 88/174 (50.57%), Query Frame = 1
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            IRD+     DF      +  L+      +LP  E ++ TP       V   KK+  V I+R+G  M + +             ++RD +  + + Y  KLP DI+ER ++++DP+LATG SA  AI LL ++G  +  I  + LIS+PEGI  V K  P + I  + ID  LN+
Sbjct:   19 IRDKNTGSKDFRELVSEVSMLMAYEVTRNLPMEEIEIETPVCKTKCKVLAGKKVAIVPILRAGLGMVDGMLQLIPAAKVGHIGLYRDEETLQPVEYFCKLPQDIAERDIIVVDPMLATGGSATDAITLLKKRGAKQ--IRLMCLISSPEGIEFVQKAHPDVDIYVACIDEKLND 190          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_BURP13.332e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia p... [more]
UPP_BURP03.332e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia p... [more]
UPP_BURMS3.332e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia m... [more]
UPP_BURMA3.332e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia m... [more]
UPP_BURM93.332e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia m... [more]
UPP_BURM73.332e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia m... [more]
UPP_BACHD4.352e-1532.20Uracil phosphoribosyltransferase OS=Bacillus halod... [more]
UPP_ALKMQ4.352e-1531.25Uracil phosphoribosyltransferase OS=Alkaliphilus m... [more]
URK1_SCHPO5.683e-1527.42Uridine kinase OS=Schizosaccharomyces pombe GN=urk... [more]
UPP_CLOPS5.683e-1533.33Uracil phosphoribosyltransferase OS=Clostridium pe... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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