CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURCJ (Uracil phosphoribosyltransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=upp PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 56/192 (29.17%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN+++      I+   T +RD+  S   F      +  L+      +LP T K+V TP  ++   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  A+ +L  + VP ++I+F+ L++APEG+       P +K+  + +D  LNE
Sbjct:    7 FPNLFITDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVAVDAPVIAGKKLAIVPVLRAGIGMSDGLLDLVPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAVHAVDVLKRRNVPAANIMFVALVAAPEGVQVFQDAHPDVKLFVASLDSHLNE 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_RHOSR (Uracil phosphoribosyltransferase OS=Rhodococcus sp. (strain RHA1) GN=upp PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 60/180 (33.33%), Postives = 95/180 (52.78%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTP----TGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDN-GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++R +  S + F   ++ +  L+    L  +P  E  V TP    TG +  G    KKL  VSI+R+G  + + +             ++RD    G    Y K+P D+ ER V+++DP+LATGNSA  A++ L E G P+S I F+ L++ PEG+  + K  P + I T+ +D  L+E
Sbjct:   17 TMMRRKDASTNSFRRLANEISALMTYEVLRDIPMQEIDVETPLEFTTGKVIDG----KKLVFVSILRAGTGILDGMLTIVPGARVGHIGLYRDPKTLGAVEYYFKMPGDLQERDVVVIDPMLATGNSAVAAVERLKECG-PKS-IKFVCLLTCPEGVAALHKAHPDVPIYTAAVDRQLDE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_DIAST (Uracil phosphoribosyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=upp PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 60/191 (31.41%), Postives = 99/191 (51.83%), Query Frame = 1
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            NV+VI     ++   TL+R +  S + F      L  L+       +P  + Q+ TP  +M   V   KKL  VSI+R+G    + +             ++RD D  + +  Y K+P++++ER ++++DP+LATGNSA  A+  L  K +    I F+ L++APEG+  + K  P + I T+ ID  LN+
Sbjct:    3 NVHVIDHPL-VQHKLTLMRKKDASTNSFRRLLGELSTLMAYEVTRDMPLQDIQIETPLETMTGKVIDGKKLVLVSILRAGNGFLDGMLNVVPGARIGHIGLYRDPDTLQPVEYYFKMPSEMAERDIIVVDPMLATGNSAAAAVARL--KQLQPRSIKFVCLLAAPEGVATLQKAHPDVPIYTAAIDRELND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOPE (Uracil phosphoribosyltransferase OS=Clostridium perfringens GN=upp PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 59/174 (33.91%), Postives = 88/174 (50.57%), Query Frame = 1
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            IRD+     DF      +  L+      +LP  E ++ TP       V   KK+  V I+R+G  M + +             ++RD +  + + Y  KLP DI+ER V+++DP+LATG SA  AI LL ++G  +  I  + LIS+PEGI  V K  P + I  + ID  LN+
Sbjct:   19 IRDKNTGSKDFRELVSEVSMLMAYEVTRNLPMEEIEIETPVCKTKCKVLAGKKVAIVPILRAGLGMVDGMLQLIPAAKVGHIGLYRDEETLQPVEYFCKLPQDIAERDVIVVDPMLATGGSAADAITLLKKRGAKQ--IRLMCLISSPEGIEFVQKAHPDVDIYVACIDEKLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOP1 (Uracil phosphoribosyltransferase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=upp PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 59/174 (33.91%), Postives = 88/174 (50.57%), Query Frame = 1
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            IRD+     DF      +  L+      +LP  E ++ TP       V   KK+  V I+R+G  M + +             ++RD +  + + Y  KLP DI+ER V+++DP+LATG SA  AI LL ++G  +  I  + LIS+PEGI  V K  P + I  + ID  LN+
Sbjct:   19 IRDKNTGSKDFRELVSEVSMLMAYEVTRNLPMEEIEIETPVCKTKCKVLAGKKVAIVPILRAGLGMVDGMLQLIPAAKVGHIGLYRDEETLQPVEYFCKLPQDIAERDVIVVDPMLATGGSAADAITLLKKRGAKQ--IRLMCLISSPEGIEFVQKAHPDVDIYVACIDEKLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOBB (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=upp PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 55/177 (31.07%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            +++R +     DF      +  L+       +   E ++ TP       V   KK+  V I+R+G  M + + +           ++RD +  + + Y  KLP DI ER V+++DP+LATG SA  A+ +L EKG    ++  + LISAPEGI  V ++ P + I  + ID  LNE+
Sbjct:   17 SMVRSKDTGSKDFKELVKEISMLLTYEATRDINMDEVEIETPVCKTKCRVVSGKKMAIVPILRAGLGMVDGVLSLIPAAKIGHIGLYRDEETLQPVEYFCKLPKDIEERDVIVVDPMLATGGSAADALTMLKEKGA--KNLKLMCLISAPEGIKLVQEKHPDVDIYVASIDEKLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOBA (Uracil phosphoribosyltransferase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=upp PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 55/177 (31.07%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            +++R +     DF      +  L+       +   E ++ TP       V   KK+  V I+R+G  M + + +           ++RD +  + + Y  KLP DI ER V+++DP+LATG SA  A+ +L EKG    ++  + LISAPEGI  V ++ P + I  + ID  LNE+
Sbjct:   17 SMVRSKDTGSKDFKELVKEISMLLTYEATRDINMDEVEIETPVCKTKCRVVSGKKMAIVPILRAGLGMVDGVLSLIPAAKIGHIGLYRDEETLQPVEYFCKLPKDIEERDVIVVDPMLATGGSAADALTMLKEKGA--KNLKLMCLISAPEGIKLVQEKHPDVDIYVASIDEKLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURS3 (Uracil phosphoribosyltransferase OS=Burkholderia sp. (strain 383) GN=upp PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 56/192 (29.17%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN+++      I+   T +RD+  S   F      +  L+      +LP T K+V TP   +   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  A+ +L  + VP ++I+F+ L++APEG+       P +K+  + +D  LNE
Sbjct:    7 FPNLFITDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEVDAPVIAGKKLAIVPVLRAGIGMSDGLLDLVPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAVHAVDVLKRRNVPAANIMFVALVAAPEGVQVFQDAHPDVKLFVASLDSHLNE 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURCC (Uracil phosphoribosyltransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=upp PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 56/192 (29.17%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN+++      I+   T +RD+  S   F      +  L+      +LP T K+V TP  ++   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  A+ +L  + VP ++I+F+ L++APEG+       P +K+  + +D  LNE
Sbjct:    7 FPNLFITDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVAVDAPVIAGKKLAIVPVLRAGIGMSDGLLDLVPSARVGHIGVYRAEDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAVHAVDVLKRRNVPAANIMFVALVAAPEGVQVFQDAHPDVKLFVASLDSHLNE 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURA4 (Uracil phosphoribosyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=upp PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 56/192 (29.17%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN+++      I+   T +RD+  S   F      +  L+      +LP T K+V TP  ++   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  A+ +L  + VP ++I+F+ L++APEG+       P +K+  + +D  LNE
Sbjct:    7 FPNLFITDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVAVDAPVIAGKKLAIVPVLRAGIGMSDGLLDLVPSARVGHIGVYRAEDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAVHAVDVLKRRNVPAANIMFVALVAAPEGVQVFQDAHPDVKLFVASLDSHLNE 196          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_BURCJ5.683e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia c... [more]
UPP_RHOSR7.423e-1533.33Uracil phosphoribosyltransferase OS=Rhodococcus sp... [more]
UPP_DIAST7.423e-1531.41Uracil phosphoribosyltransferase OS=Diaphorobacter... [more]
UPP_CLOPE7.423e-1533.91Uracil phosphoribosyltransferase OS=Clostridium pe... [more]
UPP_CLOP17.423e-1533.91Uracil phosphoribosyltransferase OS=Clostridium pe... [more]
UPP_CLOBB7.423e-1531.07Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_CLOBA7.423e-1531.07Uracil phosphoribosyltransferase OS=Clostridium bo... [more]
UPP_BURS37.423e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia s... [more]
UPP_BURCC7.423e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia c... [more]
UPP_BURA47.423e-1529.17Uracil phosphoribosyltransferase OS=Burkholderia a... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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