CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BACAA (Uracil phosphoribosyltransferase OS=Bacillus anthracis (strain A0248) GN=upp PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.694e-15
Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T IRD+     DF    D +  L+       LP  + ++ TP     T V   KKL  + I+R+G  M + +             ++RD    + +  Y KLP D+ ER  ++LDP+LATG SA +AI  L ++G  +  I  + +++APEG+  V +  P + I  + +D  LN+
Sbjct:   17 TYIRDKNTGTKDFRELVDEVASLMAFEITRDLPLKDIEIETPVSKATTKVIAGKKLGLIPILRAGLGMVDGILKLIPAAKVGHVGLYRDPKTLQPVEYYVKLPTDVEERDFIVLDPMLATGGSAAEAINSLKKRGAKQ--IKLMCIVAAPEGVKVVQEEHPDVDIYVAALDEKLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BACA2 (Uracil phosphoribosyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=upp PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.694e-15
Identity = 57/177 (32.20%), Postives = 90/177 (50.85%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T IR+      DF    D +  L+       LP  E +V TP  +  + V   KKL  V I+R+G  M + +             ++RD +  K +  Y KLP+D+ ER  +++DP+LATG SA +AI  L ++G    +I F+ L++APEG+  + K    + I  + +D  LNE+
Sbjct:   17 TYIRNENTGTKDFRDLVDEVASLMAFEITRDLPLKEVEVKTPVQTATSKVISGKKLGIVPILRAGLGMVDGMLKLIPAAKVGHVGLYRDPETLKPVEYYVKLPSDVEEREFIVVDPMLATGGSAVEAINSLKKRGA--RNIRFMCLVAAPEGVEELQKHHSDVDIYIAALDEKLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_ANOFW (Uracil phosphoribosyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=upp PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.694e-15
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T IRD+     +F    + +  L+       LP  E  + TP       V   KKL  + I+R+G  M + +             ++RD +  K +  Y KLP D+ ER  +++DP+LATG SA +AI  L ++G    +I F+ LI+APEG+  V +  P + I  + +D  LN+
Sbjct:   17 TYIRDKHTGTKEFRELVEEVATLMAFEITRDLPLQEVDIETPVSKAKAKVIAGKKLGIIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPETLKPVEYYVKLPTDVEERDFIVVDPMLATGGSAVEAIHALKKRGA--KNIKFMCLIAAPEGVEAVQQAHPDVDIYIAALDEKLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_ACISJ (Uracil phosphoribosyltransferase OS=Acidovorax sp. (strain JS42) GN=upp PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.694e-15
Identity = 60/191 (31.41%), Postives = 99/191 (51.83%), Query Frame = 1
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            NV+VI     ++   TL+R +  S + F      L  L+       +P  + Q+ TP  +M   V   KKL  VSI+R+G    + +             ++RD D  + +  Y K+P++++ER ++++DP+LATGNSA  A+  L  K +    I F+ L++APEG+  + K  P + I T+ ID  LN+
Sbjct:    3 NVHVIDHPL-VQHKLTLMRRKDASTNSFRRLLGELSTLMAYEVTRDMPLQDIQIETPLETMTGKVIDGKKLVLVSILRAGNGFLDGMLNVVPGARIGHIGLYRDPDTLQPVEYYFKMPSEMAERDIIVVDPMLATGNSAAAAVARL--KQLQPRSIKFVCLLAAPEGVATLQKAHPDVPIYTAAIDRELND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACCB (Uracil phosphoribosyltransferase OS=Lactobacillus casei (strain BL23) GN=upp PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            TLIRD+     +F   ++ +  L+V      LP    ++ TP G         KKL  V I+R+G  M + +             ++RD    K   Y  K+P DI +R ++++DP+LATG SAN AI+ L ++G     ++   L++APEG+  V    P + I  + +D  LNE
Sbjct:   17 TLIRDKHAGTKEFREIANEIAELMVYEITRDLPLESIEIETPMGKTIQKQLAGKKLAVVPILRAGLGMVDGVLRLIPAAKVGHIGMYRDEKTLKPHEYFVKMPPDIEQRDLIIVDPMLATGGSANMAIEALKKRGATSMRLVV--LVAAPEGVKAVQAANPDVDIYAAALDDHLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACC3 (Uracil phosphoribosyltransferase OS=Lactobacillus casei (strain ATCC 334) GN=upp PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            TLIRD+     +F   ++ +  L+V      LP    ++ TP G         KKL  V I+R+G  M + +             ++RD    K   Y  K+P DI +R ++++DP+LATG SAN AI+ L ++G     ++   L++APEG+  V    P + I  + +D  LNE
Sbjct:   17 TLIRDKHAGTKEFREIANEIAELMVYEITRDLPLESIEIETPMGKTIQKQLAGKKLAVVPILRAGLGMVDGVLRLIPAAKVGHIGMYRDEKTLKPHEYFVKMPPDIEQRDLIIVDPMLATGGSANMAIEALKKRGATSMRLVV--LVAAPEGVKAVQAANPDVDIYAAALDDHLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BURCM (Uracil phosphoribosyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=upp PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 56/192 (29.17%), Postives = 95/192 (49.48%), Query Frame = 1
Query:   34 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +PN+++      I+   T +RD+  S   F      +  L+      +LP T K+V TP  ++   V   KKL  V ++R+G  M + L             ++R  D+       +LP D+ +R  +L DP++ATG SA  A+ +L  + VP ++I F+ L++APEG+       P +K+  + +D  LNE
Sbjct:    7 FPNLFITDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVAVDAPVIAGKKLAIVPVLRAGIGMSDGLLDLVPSARVGHIGVYRAEDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAVHAVDVLKRRNVPAANITFVALVAAPEGVQVFQDAHPDVKLFVASLDSHLNE 196          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BACP2 (Uracil phosphoribosyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=upp PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 58/177 (32.77%), Postives = 88/177 (49.72%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T IRD      +F    D +  L+       LP  E  V TP     + V   KKL  V I+R+G  M + +             ++RD    K +  Y KLP+D+ ER  +++DP+LATG SA +A+  L ++G    +I F+ LI+APEG+  + K  P + I  + +D  LNE+
Sbjct:   17 TYIRDVHTGTKEFRELVDEVATLMAFEITRDLPLEEVDVETPVQVAKSNVISGKKLGVVPILRAGLGMVDGILKLIPAAKVGHVGLYRDPKTLKPVEYYVKLPSDVEEREFIVVDPMLATGGSAVEALNSLKKRGA--KNIRFMCLIAAPEGVEEMQKHHPDVDIYIAALDEKLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BACSU (Uracil phosphoribosyltransferase OS=Bacillus subtilis GN=upp PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 56/177 (31.64%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T IR+      DF    D +  L+       LP  E  + TP  +  + V   KKL  V I+R+G  M + +             ++RD +  K +  Y KLP+D+ ER  +++DP+LATG SA +AI  L ++G    +I F+ L++APEG+  + K    + I  + +D  LNE+
Sbjct:   17 TYIRNENTGTKDFRELVDEVATLMAFEITRDLPLEEVDINTPVQAAKSKVISGKKLGVVPILRAGLGMVDGILKLIPAAKVGHVGLYRDPETLKPVEYYVKLPSDVEEREFIVVDPMLATGGSAVEAIHSLKKRGA--KNIRFMCLVAAPEGVEELQKHHSDVDIYIAALDEKLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LYSSC (Uracil phosphoribosyltransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=upp PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.160e-14
Identity = 55/176 (31.25%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T IRD+     +F    D +  L+       +P  E ++ TP     T V   KKL  V I+R+G  M + +             ++RD +  K +  Y KLP D+ ER  +++DP+LATG SA +AI  L ++G    +I F+ LI+APEG+  + +    + I  + +D  LN+
Sbjct:   17 TYIRDKNTGTKEFRELVDEVATLMAFEITRDMPVEEIEIETPVTIAKTKVLSGKKLAIVPILRAGIGMVDGVLKLIPAAKVGHIGLYRDPETLKPVEYYAKLPADVEERDFIIVDPMLATGGSAVEAIHSLKKRGA--KNIKFMCLIAAPEGVKAIQEEHSDVDIYIAALDEKLND 190          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_BACAA9.694e-1530.68Uracil phosphoribosyltransferase OS=Bacillus anthr... [more]
UPP_BACA29.694e-1532.20Uracil phosphoribosyltransferase OS=Bacillus amylo... [more]
UPP_ANOFW9.694e-1531.25Uracil phosphoribosyltransferase OS=Anoxybacillus ... [more]
UPP_ACISJ9.694e-1531.41Uracil phosphoribosyltransferase OS=Acidovorax sp.... [more]
UPP_LACCB1.266e-1431.25Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_LACC31.266e-1431.25Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_BURCM1.266e-1429.17Uracil phosphoribosyltransferase OS=Burkholderia a... [more]
UPP_BACP21.266e-1432.77Uracil phosphoribosyltransferase OS=Bacillus pumil... [more]
UPP_BACSU1.654e-1431.64Uracil phosphoribosyltransferase OS=Bacillus subti... [more]
UPP_LYSSC2.160e-1431.25Uracil phosphoribosyltransferase OS=Lysinibacillus... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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