CX289149

Overview
NameCX289149
Unique NameCX289149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EI3HA_DANRE (Eukaryotic translation initiation factor 3 subunit H-A OS=Danio rerio GN=eif3ha PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.091e-33
Identity = 71/161 (44.10%), Postives = 107/161 (66.46%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            P++ +Q++GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  ++++E D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP ++ QG+L  KA +L+   M++ +  +FT E L++  +++
Sbjct:   18 PVKQIQVDGLVVLKIIKHYQEEGQGSEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDVEFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVSRALLDSQFSYQHAIEESVVLIYDPLKTAQGSLCLKAYRLTPKLMEICKEKDFTPEGLKKAAVAY 177          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_CHICK (Eukaryotic translation initiation factor 3 subunit H OS=Gallus gallus GN=EIF3H PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.344e-33
Identity = 72/160 (45.00%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   96 LRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++
Sbjct:   32 VKQVQIDGLVVLKIIKHYQEEGQGNEVVQGVLLGLVVDDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANIAY 190          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EI3HB_DANRE (Eukaryotic translation initiation factor 3 subunit H-B OS=Danio rerio GN=eif3hb PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 5.344e-33
Identity = 70/161 (43.48%), Postives = 107/161 (66.46%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            P++ +QIEGLV++KIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST+ G F +  L+++  +YQ  I   V +IYDP ++ QG+L  KA +L+   M++ +  +F+ E L++ ++ +
Sbjct:   16 PVKQIQIEGLVVMKIIKHYQEEGQGSEVVQGVLLGLVVEDQLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTLYGSFVSRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLCLKAYRLTPKLMEICKEKDFSSEGLKKASVGY 175          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPTN (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_00190 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.979e-33
Identity = 76/178 (42.70%), Postives = 104/178 (58.43%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADG-------------AN--YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            PL  V++E LV++KIIKHC +  P   TG ++G+D    LE+TN FPFP+ E   E   D              AN  YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS QG+L+ +A +LS  FM  ++ N FT E+L++  L + DI
Sbjct:    7 PLTAVKVEALVVMKIIKHCSQTFPTTATGSIVGMDAEGTLEITNSFPFPVVEMPAESHFDNTAPNPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQYFYQKEMNERTVALVHDVSRSAQGSLSLRAFRLSPKFMAAFKENKFTAEELQKSGLRYQDI 184          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_RAT (Eukaryotic translation initiation factor 3 subunit H OS=Rattus norvegicus GN=Eif3h PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.115e-33
Identity = 72/160 (45.00%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   96 LRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++
Sbjct:   36 VKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANITF 194          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_HUMAN (Eukaryotic translation initiation factor 3 subunit H OS=Homo sapiens GN=EIF3H PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.115e-33
Identity = 72/160 (45.00%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   96 LRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++
Sbjct:   36 VKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANITF 194          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_BOVIN (Eukaryotic translation initiation factor 3 subunit H OS=Bos taurus GN=EIF3H PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.190e-32
Identity = 72/160 (45.00%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   96 LRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++
Sbjct:   36 VKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKGNITF 194          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPNC (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An08g01790 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.555e-32
Identity = 74/178 (41.57%), Postives = 104/178 (58.43%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEAD---------------GANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            PL  V++E LV++KIIKH  +  P   TG ++G+DV   LE+TN FPFP+ E   E   D                A Y+ EM+R +REVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS QG+L+ +A +LS  FM  ++ N FT E+L++ NL + DI
Sbjct:    7 PLTAVKVEALVVMKIIKHGSQAFPTTATGSIVGMDVDGTLEITNSFPFPVVEVPAESHFDNTAPNPAAAAPRAKANAAYEAEMVRMMREVNVDANNVGWYTSANMGNFINMNVIENQFFYQKEMNERTVALVHDVSRSAQGSLSLRAFRLSPKFMAAFKENKFTSEELQKSNLRYQDI 184          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_SALSA (Eukaryotic translation initiation factor 3 subunit H OS=Salmo salar GN=eif3h PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.464e-32
Identity = 70/156 (44.87%), Postives = 104/156 (66.67%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLRE 554
            P++ +QIEGLV+LK+IKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++
Sbjct:   27 PVKQIQIEGLVVLKMIKHYQEEGQGSEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVSRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEICKEKDFSAEGLKK 181          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_NEUCR (Eukaryotic translation initiation factor 3 subunit H OS=Neurospora crassa GN=NCU07929 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.464e-32
Identity = 74/176 (42.05%), Postives = 102/176 (57.95%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFP---IQEEDEEIEADG---------AN--YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            P++ VQ+E LV++KI+KHC    P + TG ++G+D    +EVTN F FP   +   D   +A           AN  YQ EM+R L+EVNVD N VGWY S  +G F     IE   +YQ+   + V +++D SRS+QGAL+ +A KLS  FM  Y+   FT E LR   L++ DI
Sbjct:    9 PIKSVQVEALVVMKIVKHCSTSFPTVATGSIVGMDNNGAIEVTNSFQFPSVDVSSSDSHSDASSLAAAAPRAKANIVYQNEMIRHLKEVNVDANNVGWYTSATMGNFINMSFIENQYHYQKENEKTVALVHDVSRSSQGALSLRAFKLSPEFMTAYKEAKFTTESLRNSKLTYKDI 184          
The following BLAST results are available for this feature:
BLAST of CX289149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EI3HA_DANRE4.091e-3344.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CHICK5.344e-3345.00Eukaryotic translation initiation factor 3 subunit... [more]
EI3HB_DANRE5.344e-3343.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPTN6.979e-3342.70Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_RAT9.115e-3345.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_HUMAN9.115e-3345.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOVIN1.190e-3245.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPNC1.555e-3241.57Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_SALSA3.464e-3244.87Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEUCR3.464e-3242.05Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009G04SK IF1 Citrus clementina cDNA clone C02009G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289149 ID=CX289149; Name=CX289149; organism=Citrus clementina; type=EST; length=578bp
GCACGCGTAGAGAAAGGAGATTGTTCTTCCAAATGGCAAATACAATGGCT
AGGTCTTTTCTACAAGTTGCAGCTGCGGAGGAGGTTGCGCCGCCTCTCAG
AGTTGTTCAGATTGAGGGTCTGGTTATGCTAAAAATAATCAAACACTGCA
AGGAGTTTTCACCAGCTTTGGTGACGGGACAACTCCTTGGGTTAGATGTT
GGTAGCGTGCTTGAAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGA
GGACGAAGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGA
GGTGTCTAAGAGAGGTTAATGTGGACAATAACACTGTTGGATGGTACCAA
TCAACAATGCTAGGATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCT
GAACTACCAGGAGAATATTAGAAGGTGTGTCTGCATAATTTATGACCCTT
CAAGGTCCAATCAAGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGAT
TCCTTTATGGATCTTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAG
GGAGAAAAATTTATCATGGGTGGATATT
back to top