CX289149

Overview
NameCX289149
Unique NameCX289149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig310 contig Ccv1_Contig310:26..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_MOUSE (Eukaryotic translation initiation factor 3 subunit H OS=Mus musculus GN=Eif3h PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.464e-32
Identity = 71/160 (44.38%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   96 LRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ ++++
Sbjct:   36 VKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKASITF 194          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPOR (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus oryzae GN=AO090038000435 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.908e-32
Identity = 73/178 (41.01%), Postives = 103/178 (57.87%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGA---------------NYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            PL  V+++ LV++KIIKH  +  P   TG ++G+DV   LE+TN FPFP+ E   +   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS QG+L+ +A +LS  FM  ++ N FT E+L++ +L   DI
Sbjct:    7 PLTAVKVDALVVMKIIKHSSQSFPTTATGSIVGMDVDGTLEITNSFPFPVVEMPADSHFDNAAPNPAAAAPRAKANVAYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDVSRSAQGSLSLRAFRLSSKFMTAFKENKFTSEELQKSSLRHQDI 184          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_NEOFI (Eukaryotic translation initiation factor 3 subunit H OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_015650 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.001e-31
Identity = 70/166 (42.17%), Postives = 97/166 (58.43%), Query Frame = 3
Query:  129 LKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            +KI+KHC +  P   TG ++G+DVG  LE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++  L + DI
Sbjct:    1 MKIMKHCSQTFPTTATGSIVGMDVGGTLEITNSFPFPVVEVPPESHFDNAAANPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPRFMTAFKENKFTSEELQKSGLRYQDI 166          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_COCIM (Eukaryotic translation initiation factor 3 subunit H OS=Coccidioides immitis GN=CIMG_10297 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.242e-30
Identity = 71/166 (42.77%), Postives = 96/166 (57.83%), Query Frame = 3
Query:  129 LKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENI-RRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            +KIIKH  +  P   TG L+G+DV   LEVTN FPFPI +   +   DGA                YQ EM++ LREVN+D N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS+QGAL+ +A +LS  FM  ++ N FT E L++ NL + DI
Sbjct:    1 MKIIKHSTQLFPTTATGSLVGMDVRGTLEVTNAFPFPIVDIPADSHLDGAPANAAAAAPRAKSNAVYQSEMIKMLREVNIDANNVGWYTSANMGNFVNLNIIENQYFYQKELNERTVALVHDVSRSSQGALSLRAFRLSPQFMAAFKENKFTTENLQKSNLRYQDI 166          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_MAGGR (Eukaryotic translation initiation factor 3 subunit H OS=Magnaporthe grisea GN=MGG_05156 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30
Identity = 69/179 (38.55%), Postives = 102/179 (56.98%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPI----------QEEDEEIEADGAN-------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            P++ VQ+E LV++KI KHC    P + TG ++G+D  +++EVTN   FP            E D   +A  A        YQ EM++ LREVNVD N VGWY S  +G F T   IE   +YQ    + + +++D SRS+Q +L+ +A +LS +FM   + N FT E L++  L++ DI
Sbjct:    9 PIKSVQVEALVVMKIAKHCSSSFPTIATGSIVGMDNDTLVEVTNSLNFPTVDVANVDSHQSERDASAQAAAAPRSKANLMYQAEMIKHLREVNVDANCVGWYTSATMGNFVTMSFIENQAHYQRENPKAIALVHDVSRSSQASLSLRAFRLSTAFMTALKENKFTTENLQKTKLTYKDI 187          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_CULQU (Eukaryotic translation initiation factor 3 subunit H OS=Culex quinquefasciatus GN=CPIJ005299 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.584e-29
Identity = 72/171 (42.11%), Postives = 103/171 (60.23%), Query Frame = 3
Query:   75 AEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA---LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            A+EV   +  VQ +GL  +K++KHC E S +   +  G LLGL V   LE+TNCFPFP +  DE I+ +   YQL MMR LR VNVD+  VGWYQS  +G F +  L+E+  +YQ +I   V +IYD  +S +G L  KA +L+   + +Y+   FT E LR   + + ++
Sbjct:   11 AQEVDNTISYVQCDGLAAMKMVKHCHEESLSNMEVAQGALLGLVVDDRLEITNCFPFP-KSSDETIDEE--EYQLNMMRRLRLVNVDHFHVGWYQSADVGNFLSLPLLESQYHYQTSIEESVVVIYDTQKSKRGFLTLKAYRLTPQAIAMYKEGEFTPEALRNLKVGYENL 178          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_AEDAE (Eukaryotic translation initiation factor 3 subunit H OS=Aedes aegypti GN=AAEL007945 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.681e-29
Identity = 72/171 (42.11%), Postives = 103/171 (60.23%), Query Frame = 3
Query:   75 AEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA---LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            A+EV   +  VQ +GL  +K++KHC E S +   +  G LLGL V   LE+TNCFPFP +  DE I+ +   YQL MMR LR VNVD+  VGWYQS  +G F +  L+E+  +YQ +I   V +IYD  +S +G L  KA +L+   + +Y+   FT E LR   + + ++
Sbjct:   11 AQEVDNTISYVQCDGLAAMKMVKHCHEESRSNMEVAQGALLGLVVDDRLEITNCFPFP-KSSDETIDEE--EYQLNMMRRLRLVNVDHFHVGWYQSADVGNFLSLPLLESQYHYQTSIEESVVVIYDTQKSARGFLTLKAYRLTPQAIAMYKEEKFTPEALRNLKVGYENL 178          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_BOTFB (Eukaryotic translation initiation factor 3 subunit H OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_03240 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.985e-29
Identity = 75/188 (39.89%), Postives = 108/188 (57.45%), Query Frame = 3
Query:   72 AAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQE-------EDEEIEADG---------AN--YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQ-ENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            A++EV  PL  VQ+E LV++KI+K C    P   TG ++G+D    L++TN FPFP  +        ++ + A           AN  YQ EM++ L+EVNVD N VGWY S  +G F    LIE    YQ E   R V +++D SRS QGAL+ +A +LS +FM  Y+ + FT E +++  L++ DI
Sbjct:    5 ASKEV--PLHSVQVEALVVMKIVKACAATYPTTATGSIVGMDSNGTLQITNSFPFPTTDVATSDSHPNDHMAASNIAAAAPRSKANVIYQSEMIKMLKEVNVDANNVGWYTSANMGNFINTSLIENQFFYQKEPNERTVALVHDVSRSAQGALSLRAFRLSPTFMAAYKESKFTTENMQKSKLTYKDI 190          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_BOMMO (Eukaryotic translation initiation factor 3 subunit H OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.043e-28
Identity = 69/171 (40.35%), Postives = 104/171 (60.82%), Query Frame = 3
Query:   75 AEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA---LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            A E    ++ VQ +GL ++KI+KHC E S +   +  G LLGL V + LE+TNCFPFP  ++  + E     YQL+MMR LR VNVD+  VGWYQS  +G F +  L+E+  +YQ +I   V +IYD  +S +G L  KA +L+   + +Y+  ++T E LR   + + ++
Sbjct:   11 APENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEE----EYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENL 177          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_ANOGA (Eukaryotic translation initiation factor 3 subunit H OS=Anopheles gambiae GN=AGAP009204 PE=3 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.043e-28
Identity = 71/173 (41.04%), Postives = 104/173 (60.12%), Query Frame = 3
Query:   69 AAAEEVAPPLRVVQIEGLVMLKIIKHCKEFS---PALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            A ++ V   +  VQ +GL  +K++KHC E S     +  G LLGL V   LE+TNCFPFP  + DE I+ +   YQL MMR LR VNVD+  VGWYQS  +G F ++ L+E+  +YQ +I   V +IYD  +S +G L  KA +L+   + +Y+  +FT E LR   + + ++
Sbjct:    8 ARSQPVDNTISYVQCDGLAAMKMVKHCHEESLNNMEVAQGALLGLVVDDRLEITNCFPFP--KSDETIDEE--EYQLNMMRRLRHVNVDHFHVGWYQSADVGNFLSSTLLESQYHYQTSIEESVVVIYDTQKSARGFLTLKAYRLTPQAIAMYKERDFTPEALRNLKVGYENL 176          
The following BLAST results are available for this feature:
BLAST of CX289149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EIF3H_MOUSE3.464e-3244.38Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPOR5.908e-3241.01Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEOFI5.001e-3142.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_COCIM3.242e-3042.77Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_MAGGR9.432e-3038.55Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CULQU3.584e-2942.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_AEDAE4.681e-2942.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOTFB7.985e-2939.89Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOMMO1.043e-2840.35Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ANOGA1.043e-2841.04Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC02009G04SK IF1 Citrus clementina cDNA clone C02009G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289149 ID=CX289149; Name=CX289149; organism=Citrus clementina; type=EST; length=578bp
GCACGCGTAGAGAAAGGAGATTGTTCTTCCAAATGGCAAATACAATGGCT
AGGTCTTTTCTACAAGTTGCAGCTGCGGAGGAGGTTGCGCCGCCTCTCAG
AGTTGTTCAGATTGAGGGTCTGGTTATGCTAAAAATAATCAAACACTGCA
AGGAGTTTTCACCAGCTTTGGTGACGGGACAACTCCTTGGGTTAGATGTT
GGTAGCGTGCTTGAAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGA
GGACGAAGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGA
GGTGTCTAAGAGAGGTTAATGTGGACAATAACACTGTTGGATGGTACCAA
TCAACAATGCTAGGATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCT
GAACTACCAGGAGAATATTAGAAGGTGTGTCTGCATAATTTATGACCCTT
CAAGGTCCAATCAAGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGAT
TCCTTTATGGATCTTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAG
GGAGAAAAATTTATCATGGGTGGATATT
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