CX289149

Overview
NameCX289149
Unique NameCX289149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_SCLS1 (Eukaryotic translation initiation factor 3 subunit H OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_01190 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.362e-28
Identity = 72/181 (39.78%), Postives = 102/181 (56.35%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQE-------EDEEIEADG---------AN--YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQ-ENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            PL  VQ+E LV++KI+K C    P   TG ++G+D    L++TN FPFP  +        ++ + A           AN  YQ EM++ L+EVNVD N VGWY S  +G F    LIE    YQ E   R V +++D SRS QGAL+ +A +LS +FM  Y+   FT E +++  L++ DI
Sbjct:   10 PLHSVQVEALVVMKIVKACAATYPTTATGSIVGMDSNGTLQITNSFPFPTADVAASDSHPNDHMAASNIAAAAPRSKANIVYQSEMIKMLKEVNVDANNVGWYTSANMGNFINTSLIENQFFYQKEPNERTVALVHDVSRSAQGALSLRAFRLSPNFMTAYKEGKFTTENMQKSKLTYKDI 190          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_DROGR (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila grimshawi GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.323e-28
Identity = 73/175 (41.71%), Postives = 104/175 (59.43%), Query Frame = 3
Query:   33 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLR 551
            MAN  AR     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE +  D   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+ ++FT E  R
Sbjct:    1 MANRGARH----ARTEDTENTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETM--DDETYQLTVMRHLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDSDFTPEAFR 168          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_PHANO (Eukaryotic translation initiation factor 3 subunit H OS=Phaeosphaeria nodorum GN=SNOG_06952 PE=3 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 3.963e-28
Identity = 73/181 (40.33%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   93 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN------------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            P + VQ++ LV +KI     +  P+L TG L+G++   VLE+TN FP+P   E     ADG N                  Y  EM++ LREVNVD N VGWY ST +G F     IE    YQ  +  R V +IYD SRS+QG L  +A +LS SF+  Y+   FT E L++ +L + DI
Sbjct:    9 PFKTVQVDALVAIKIATASGKAFPSLATGSLVGMEKNGVLEITNSFPYP---EINTASADGQNDTAANLSAAAPRAKQNIAYGNEMIKFLREVNVDANNVGWYTSTSMGNFVNLNTIENQFYYQSQLNERTVALIYDVSRSSQGTLNLRAYRLSPSFVTAYKEGKFTTESLQKSSLRYQDI 186          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_DROWI (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila willistoni GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.828e-28
Identity = 68/169 (40.24%), Postives = 101/169 (59.76%), Query Frame = 3
Query:   69 AAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            A  EE    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + +
Sbjct:    9 ARTEETENAINYVQCDGLAVMKMVKHCHEESNNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRNLKVGY 174          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_DROVI (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila virilis GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.506e-27
Identity = 72/175 (41.14%), Postives = 104/175 (59.43%), Query Frame = 3
Query:   33 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLR 551
            MAN  AR     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R
Sbjct:    1 MANRGARH----ARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFR 168          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_DROSE (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila sechellia GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.967e-27
Identity = 71/184 (38.59%), Postives = 107/184 (58.15%), Query Frame = 3
Query:   33 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            MAN   R     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + + ++
Sbjct:    1 MANRANR---HAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYENL 178          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_DROME (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila melanogaster GN=eIF-3p40 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.967e-27
Identity = 71/184 (38.59%), Postives = 107/184 (58.15%), Query Frame = 3
Query:   33 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            MAN   R     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + + ++
Sbjct:    1 MANRANR---HAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYENL 178          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_DROYA (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila yakuba GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.569e-27
Identity = 71/175 (40.57%), Postives = 103/175 (58.86%), Query Frame = 3
Query:   33 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLR 551
            MAN   R     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R
Sbjct:    1 MANRANR---HAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFR 169          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_DROER (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila erecta GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.355e-27
Identity = 71/175 (40.57%), Postives = 103/175 (58.86%), Query Frame = 3
Query:   33 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLR 551
            MAN   R     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R
Sbjct:    1 MANRANR---HAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--LYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFR 169          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_DROAN (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila ananassae GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.355e-27
Identity = 68/163 (41.72%), Postives = 99/163 (60.74%), Query Frame = 3
Query:   69 AAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLR 551
            A  EE    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R
Sbjct:    9 ARNEESDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFR 168          
The following BLAST results are available for this feature:
BLAST of CX289149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EIF3H_SCLS11.362e-2839.78Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROGR2.323e-2841.71Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_PHANO3.963e-2840.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROWI8.828e-2840.24Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROVI1.506e-2741.14Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROSE1.967e-2738.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROME1.967e-2738.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROYA2.569e-2740.57Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROER3.355e-2740.57Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROAN3.355e-2741.72Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009G04SK IF1 Citrus clementina cDNA clone C02009G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289149 ID=CX289149; Name=CX289149; organism=Citrus clementina; type=EST; length=578bp
GCACGCGTAGAGAAAGGAGATTGTTCTTCCAAATGGCAAATACAATGGCT
AGGTCTTTTCTACAAGTTGCAGCTGCGGAGGAGGTTGCGCCGCCTCTCAG
AGTTGTTCAGATTGAGGGTCTGGTTATGCTAAAAATAATCAAACACTGCA
AGGAGTTTTCACCAGCTTTGGTGACGGGACAACTCCTTGGGTTAGATGTT
GGTAGCGTGCTTGAAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGA
GGACGAAGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGA
GGTGTCTAAGAGAGGTTAATGTGGACAATAACACTGTTGGATGGTACCAA
TCAACAATGCTAGGATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCT
GAACTACCAGGAGAATATTAGAAGGTGTGTCTGCATAATTTATGACCCTT
CAAGGTCCAATCAAGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGAT
TCCTTTATGGATCTTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAG
GGAGAAAAATTTATCATGGGTGGATATT
back to top