CX289149

Overview
NameCX289149
Unique NameCX289149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_DROMO (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila mojavensis GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.382e-27
Identity = 68/163 (41.72%), Postives = 99/163 (60.74%), Query Frame = 3
Query:   69 AAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLR 551
            A  E+    +  VQ +GL ++K+IKHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R
Sbjct:    9 ARNEDSENTINYVQCDGLAVMKMIKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFR 168          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_DROPS (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila pseudoobscura pseudoobscura GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.761e-27
Identity = 67/163 (41.10%), Postives = 98/163 (60.12%), Query Frame = 3
Query:   69 AAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLR 551
            A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S +G L  KA +L+   + +Y+  +FT E  R
Sbjct:    9 ARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSARGFLCLKAYRLTPQAIQMYKDGDFTPEAFR 168          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_MONBE (Eukaryotic translation initiation factor 3 subunit H OS=Monosiga brevicollis GN=9558 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.356e-25
Identity = 62/167 (37.13%), Postives = 100/167 (59.88%), Query Frame = 3
Query:   96 LRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDV---------GSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            ++ V ++ LV++KIIKH +E     V G LLGL            ++LEVTNCFP P   +D++ ++    YQ++MMR LREVNVD+  VGWYQ+  +G F   ++      +Q ++   V +IYDP  + QG L+  A +LS+  M+L+ +++F  + +RE  L++
Sbjct:   30 VKQVTVDALVVMKIIKHARENPHEPVRGPLLGLSQLADASKPGEDALLEVTNCFPTPRVSDDDD-DSIVQQYQVQMMRWLREVNVDHMNVGWYQAADMGTFFDEDVAAVQFQHQRHMAESVVLIYDPVLTLQGTLSLSAFRLSNKAMELFSTDSFNPKAVREAGLTY 195          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_CHAGB (Eukaryotic translation initiation factor 3 subunit H OS=Chaetomium globosum GN=CHGG_05046 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.193e-24
Identity = 60/160 (37.50%), Postives = 89/160 (55.62%), Query Frame = 3
Query:  144 HCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEED--EEIEADGAN-------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            HC    P   TG ++G+D   V+E+TN FPFP  +    +  ++D  +             YQ EM+R L+EVNVD N VGWY S  +G F     IE   +YQ +  + V +++D SRS+QGAL+ +A +LS  FM  ++   FT E L++  L++ DI
Sbjct:   28 HCSSSFPTTATGSIVGMDNNGVIEITNAFPFPTVDVSGTDSHQSDATSLAAAAPRAKANIAYQNEMIRHLKEVNVDANNVGWYTSATMGNFINLSFIENQHHYQRDNDKTVALVHDVSRSSQGALSLRAFRLSPEFMAAFKEGKFTTESLQKSKLTFRDI 187          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_YARLI (Eukaryotic translation initiation factor 3 subunit H OS=Yarrowia lipolytica GN=YALI0F16005g PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.939e-23
Identity = 66/186 (35.48%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  105 VQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADG---------ANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSN------------QG-------ALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            V I+  V LKI++HC+E +P++V GQLLGLDV   L +++ F FP         +D          A YQ EM+  L+EVNVD+N+VGWYQST+LG    A +IE    +QE     V ++YD + S             QG           +A +LS+ ++++ +S  F    L E NL++ D+
Sbjct:    6 VCIDSSVALKIVRHCQESAPSIVAGQLLGLDVDGELRISHAFAFPQNAAGGNPNSDDGLSLRLKAVAKYQPEMIDHLKEVNVDSNSVGWYQSTVLGRIYNASVIENLAVFQEKNPDSVVLVYDVAGSEVVSDTDPSSTGPQGHTTTTPSGFNLRAFRLSEEYLNVRKSGKFDTATLTENNLTYHDV 191          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_USTMA (Eukaryotic translation initiation factor 3 subunit H OS=Ustilago maydis GN=UM00199 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 61/174 (35.06%), Postives = 95/174 (54.60%), Query Frame = 3
Query:  105 VQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFP-----IQEEDEEIEADGAN---YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRR--------CVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDI 578
            V+++GL + KI+KHC++  PA  +G LLG+D+G  LE++N F  P       E DEE +    N   Y  +M+R LR+VN D N VG YQ   LG F  + +I+        + R         V I++D ++S QG  + KA +LS SF+D ++   F  + L +  L++ +I
Sbjct:   57 VRLDGLALTKIVKHCRDAHPASASGALLGMDLGGTLEISNVFALPNPGRSNSERDEEEDRSSRNATRYTSDMVRLLRDVNADANPVGLYQGCFLGAFLNSSVIDGLAAITGLVERDGAGSRGKGVLIVHDLAQSAQGNTSVKAYRLSPSFVDAHKKGKFHTQSLIDHKLTFSNI 230          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_CAEEL (Eukaryotic translation initiation factor 3 subunit H OS=Caenorhabditis elegans GN=eif-3.H PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.342e-18
Identity = 57/179 (31.84%), Postives = 96/179 (53.63%), Query Frame = 3
Query:   87 APPLRVVQIEGLVMLKIIKHC--------KEFSPALVTGQLLGLDV--GSVLEVTNCFPF----PIQEED----EEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            AP ++ + ++ LV++KI+KH          E S     G L GL     S LE+TNCFP     P+ ++D    ++ E    +  L+M+R  R +N+D   VG+YQS   G   + +L+E+  +YQ      V +IYDP ++ QG L+ +A +LS + +DL   N++  E ++   L++
Sbjct:    9 APSVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLEITNCFPTVRNEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSLRAWRLSTAALDLASKNDWRPELVKAAGLTY 187          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_CAEBR (Eukaryotic translation initiation factor 3 subunit H OS=Caenorhabditis briggsae GN=eif-3.H PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 57/179 (31.84%), Postives = 95/179 (53.07%), Query Frame = 3
Query:   87 APPLRVVQIEGLVMLKIIKHC--------KEFSPALVTGQLLGLDV--GSVLEVTNCFPF----PIQEED----EEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            AP ++ + ++ LV++KI+KH          E S     G L GL     S LE+TNCFP     P+ ++D    ++ E       L+M+R  R +N+D   VG+YQS   G   + +L+E+  +YQ      V +IYDP ++ QG L+ +A +LS + +DL   N++  E ++   L++
Sbjct:    9 APSVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLEITNCFPTVRNEPVIDDDANAAQQYEEQKQQEMLDMLRKFRTMNIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSIRAWRLSTAALDLASKNDWRPELVKSAGLTY 187          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_BRUMA (Eukaryotic translation initiation factor 3 subunit H OS=Brugia malayi GN=Bm1_50170 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.562e-16
Identity = 56/180 (31.11%), Postives = 97/180 (53.89%), Query Frame = 3
Query:   96 LRVVQIEGLVMLKIIKHCK------------EFSPALVTGQLLGLDVGSVLEVTNCFPFPIQE---EDEEIEADGANYQ-------LEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSW 569
            ++ VQI+ LV++KI+KH              E    L+TG L+ +D    LE+TNCFP    E   + +EI  + A Y+       L+M+R  R++N+D   VG+YQ+   G     E I++ ++YQ ++   V +IYDP ++ QG L+ +A +LS   +++    +++ E  R   L++
Sbjct:   14 VQFVQIDSLVVMKIVKHVDSEMYAGLNEVAGEACQGLLTG-LVSID-DRRLEITNCFPTARAEPMLDGDEIAQNNAFYEEQKQAEMLDMLRKFRDMNIDYELVGFYQAHPFGACFAQETIDSLIDYQASVPDGVVLIYDPVKTRQGQLSIRAYRLSTKALEMSLDGDWSPESTRTAGLTY 191          
BLAST of CX289149 vs. ExPASy Swiss-Prot
Match: EIF3H_SCHPO (Eukaryotic translation initiation factor 3 subunit H OS=Schizosaccharomyces pombe GN=eif3h PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 50/169 (29.59%), Postives = 88/169 (52.07%), Query Frame = 3
Query:   87 APPLRVVQIEGLVMLKIIKHCKEFSPALVT-GQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGA-------NYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAEL-IETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLS 566
            +PP+  V++E L+++ IIKHC++  P + T GQL+G+D+  VL+V++ F  P   E+EE   + +        +   M+  L+ +      VGWY    +  F ++   +ET   YQ+     +  +YD S+S+ G L  +A +L+  FM  +    +T   L   NL+
Sbjct:   14 SPPIERVELESLLVMNIIKHCRDSFPNMGTIGQLVGIDIDGVLQVSSSFESPSVLENEESAVNKSVSGKARQAHTEAMLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFFVETQYAYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFMAAHEEKTWTASSLNSHNLT 182          
The following BLAST results are available for this feature:
BLAST of CX289149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EIF3H_DROMO4.382e-2741.72Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROPS9.761e-2741.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_MONBE5.356e-2537.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CHAGB1.193e-2437.50Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_YARLI2.939e-2335.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_USTMA3.249e-2235.06Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CAEEL6.342e-1831.84Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CAEBR1.413e-1731.84Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BRUMA1.562e-1631.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_SCHPO2.040e-1629.59Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC02009G04SK IF1 Citrus clementina cDNA clone C02009G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289149 ID=CX289149; Name=CX289149; organism=Citrus clementina; type=EST; length=578bp
GCACGCGTAGAGAAAGGAGATTGTTCTTCCAAATGGCAAATACAATGGCT
AGGTCTTTTCTACAAGTTGCAGCTGCGGAGGAGGTTGCGCCGCCTCTCAG
AGTTGTTCAGATTGAGGGTCTGGTTATGCTAAAAATAATCAAACACTGCA
AGGAGTTTTCACCAGCTTTGGTGACGGGACAACTCCTTGGGTTAGATGTT
GGTAGCGTGCTTGAAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGA
GGACGAAGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGA
GGTGTCTAAGAGAGGTTAATGTGGACAATAACACTGTTGGATGGTACCAA
TCAACAATGCTAGGATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCT
GAACTACCAGGAGAATATTAGAAGGTGTGTCTGCATAATTTATGACCCTT
CAAGGTCCAATCAAGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGAT
TCCTTTATGGATCTTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAG
GGAGAAAAATTTATCATGGGTGGATATT
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