CX289264

Overview
NameCX289264
Unique NameCX289264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig305 contig Ccv1_Contig305:636..1250. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: WWP2_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.864e-14
Identity = 57/186 (30.65%), Postives = 92/186 (49.46%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEH 597
            + YFR +GR +A AL  G+ +D  F+  FYK +L     L D+   D EF        ++  ++ +LE       E  ++L F    I+D+ +   L     + LK G E++ +   N EEYI L+ D     G+  Q +AF  GFN+V  +  L+ F   EL+ +LCG +E+    W+ + +  H
Sbjct:  602 LTYFRFIGRFIAMALYHGKFIDTGFTLPFYKRMLNKRPTLKDLESIDPEFYN-----SIVWIKENNLE-------ECGLELYF----IQDMEI---LGKVTTHELKEGGESIRVTEENKEEYIMLLTDWRFTRGVEEQTKAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKSTIYRH 768          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: WWP1_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 55/186 (29.57%), Postives = 85/186 (45.70%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEH 597
            + YF  +GR +A AL  G+ +D  FS  FYK +L  +L + D+   D EF   L     I  R  ++E    +    +VD+   G                 + LK G  N+ +   N +EYI L+ +     G+  Q +AF  GFN+V  +  LQ F   EL+ +LCG +E+    W+   +  H
Sbjct:  650 LSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSL-----IWIRDNNIEECGLE-MYFSVDMEILGK-------------VTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH 816          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: WWP1_HUMAN (NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Homo sapiens GN=WWP1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 55/186 (29.57%), Postives = 85/186 (45.70%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEH 597
            + YF  +GR +A AL  G+ +D  FS  FYK +L  +L + D+   D EF   L     I  R  ++E    +    +VD+   G                 + LK G  N+ +   N +EYI L+ +     G+  Q +AF  GFN+V  +  LQ F   EL+ +LCG +E+    W+   +  H
Sbjct:  654 LSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSL-----IWIRDNNIEECGLE-MYFSVDMEILGK-------------VTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH 820          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: NEDD4_RAT (E3 ubiquitin-protein ligase NEDD4 OS=Rattus norvegicus GN=Nedd4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 57/189 (30.16%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYP-DYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHG 615
            + YF+ +GRV   A+  G+LLD  F   FYK++L   + LHD+   D+E+   L+ +               +N    +DLRF         +D  L G    + LK G   V +   N +EYI LV+       I +QM AF+ GF ++     ++IF  +EL+ L+CG  ++ +     EH K+ +G
Sbjct:  619 LSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEYYSSLRWI--------------LENDPTELDLRF--------IIDEELFGQTHQHELKTGGSEVVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDV-DVNDWREHTKYKNG 784          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: NEDD4_HUMAN (E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens GN=NEDD4 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 56/189 (29.63%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYP-DYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHG 615
            + YF+ +GRV   A+  G+LLD  F   FYK++L   + LHD+   D+E+   L+ +               +N    +DLRF         +D  L G    + LK G   + +   N +EYI LV+       I +QM AF+ GF ++     ++IF  +EL+ L+CG  ++ +     EH K+ +G
Sbjct: 1051 LSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEYYNSLRWI--------------LENDPTELDLRF--------IIDEELFGQTHQHELKNGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDV-DVNDWREHTKYKNG 1216          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: NEDD4_MOUSE (E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus GN=Nedd4 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 56/189 (29.63%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYP-DYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHG 615
            + YF+ +GRV   A+  G+LLD  F   FYK++L   + LHD+   D+E+   L+ +               +N    +DLRF         +D  L G    + LK G   + +   N +EYI LV+       I +QM AF+ GF ++     ++IF  +EL+ L+CG  ++ +     EH K+ +G
Sbjct:  619 LSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEYYSSLRWI--------------LENDPTELDLRF--------IIDEELFGQTHQHELKTGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDV-DVNDWREHTKYKNG 784          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: NED4L_MOUSE (E3 ubiquitin-protein ligase NEDD4-like OS=Mus musculus GN=Nedd4l PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 51/170 (30.00%), Postives = 81/170 (47.65%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCG 558
            + YF  +GRV   A+  G+LLD  F   FYK++LG ++ L+D+   D+E+   L+ +               +N    +DL F        C+D    G    + LKP    + +   N  EYI LV+       + +QM AF  GF ++  I  ++IF  +EL+ L+CG
Sbjct:  736 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI--------------LENDPTELDLMF--------CIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCG 883          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: NED4L_HUMAN (E3 ubiquitin-protein ligase NEDD4-like OS=Homo sapiens GN=NEDD4L PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 51/170 (30.00%), Postives = 81/170 (47.65%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCG 558
            + YF  +GRV   A+  G+LLD  F   FYK++LG ++ L+D+   D+E+   L+ +               +N    +DL F        C+D    G    + LKP    + +   N  EYI LV+       + +QM AF  GF ++  I  ++IF  +EL+ L+CG
Sbjct:  707 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI--------------LENDPTELDLMF--------CIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCG 854          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 58/174 (33.33%), Postives = 87/174 (50.00%), Query Frame = 1
Query:  127 PFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHV----IICRKQHLESMTSDNCEEAVDLRFRGA----PIEDLCLDFT------LPGYPDYILKPG--DENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHI 600
            P   A++  +L  E D   + P  A F K +++L +    I+  K   E   +   +E V     G+     IEDL L+F       + G+    LKP   DE + ++N EEY+ L+ D  + TGI +QMEAFR GFN+VF +  L  F+  E+  +LCG +    P+  AE I
Sbjct: 2336 PKPPAWFNGILTWE-DFELVNPHRARFLKEIKDLAIKRRQILSNKGLSEDEKNTKLQELVLKNPSGSGPPLSIEDLGLNFQFCPSSRIYGFTAVDLKPSGEDEMITMDNAEEYVDLMFDFCMHTGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQ---SPSWAAEDI 2505          
BLAST of CX289264 vs. ExPASy Swiss-Prot
Match: NED4L_PONAB (E3 ubiquitin-protein ligase NEDD4-like OS=Pongo abelii GN=NEDD4L PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 50/170 (29.41%), Postives = 81/170 (47.65%), Query Frame = 1
Query:   58 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYI-LKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCG 558
            + YF  +GRV   A+  G+LLD  F   FYK++LG ++ L+D+   D+E+   L+ +               +N    +DL F        C+D    G    + L+P    + +   N  EYI LV+       + +QM AF  GF ++  I  ++IF  +EL+ L+CG
Sbjct:  691 LSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI--------------LENDPTELDLMF--------CIDEENFGQTYQVDLEPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCG 838          
The following BLAST results are available for this feature:
BLAST of CX289264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
WWP2_HUMAN4.864e-1430.65NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Hom... [more]
WWP1_MOUSE1.198e-1229.57NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus... [more]
WWP1_HUMAN1.198e-1229.57NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Hom... [more]
NEDD4_RAT3.485e-1230.16E3 ubiquitin-protein ligase NEDD4 OS=Rattus norveg... [more]
NEDD4_HUMAN3.485e-1229.63E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens ... [more]
NEDD4_MOUSE4.552e-1229.63E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus ... [more]
NED4L_MOUSE4.552e-1230.00E3 ubiquitin-protein ligase NEDD4-like OS=Mus musc... [more]
NED4L_HUMAN4.552e-1230.00E3 ubiquitin-protein ligase NEDD4-like OS=Homo sap... [more]
HECD1_HUMAN7.765e-1233.33E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
NED4L_PONAB1.324e-1129.41E3 ubiquitin-protein ligase NEDD4-like OS=Pongo ab... [more]

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Properties
Property NameValue
Genbank descriptionC02011A07SK IF1 Citrus clementina cDNA clone C02011A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289264 ID=CX289264; Name=CX289264; organism=Citrus clementina; type=EST; length=615bp
CCTCGACCTTGGCCTCCTAGTGCTGATGCCTCTGAAGGTGGCCAGTTTAG
TAAAGTTATTGAATACTTCCGACTGCTTGGACGTGTAATGGCTAAAGCTC
TTCAAGATGGGAGGCTTTTAGACCTGCCATTTTCAACAGCATTCTACAAA
CTTGTTCTTGGTCACGAGCTTGATTTGCATGATATTATTCCCTTTGATGC
CGAGTTTGGGAAGATTTTGCAAGAGTTGCATGTCATCATTTGTCGAAAAC
AACATTTAGAATCAATGACCTCTGATAATTGCGAAGAAGCTGTGGACTTG
CGTTTTCGTGGGGCCCCGATTGAAGATCTTTGCCTGGATTTTACTCTTCC
TGGTTATCCAGACTATATTTTGAAACCAGGAGATGAAAATGTTGACATTA
ATAACTTGGAGGAATACATATCCTTGGTAGTTGATGCCACTGTCAAGACA
GGCATCATGCGGCAAATGGAAGCTTTTAGAGCTGGCTTCAATCAGGTCTT
TGACATCACATCATTACAAATATTTACTCCTCATGAATTGGACCATCTGC
TTTGTGGCCGTAGAGAGTTGTGGGAGCCTGCGGCGCTTGCTGAGCATATA
AAATTCGATCATGGA
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