CX289594

Overview
NameCX289594
Unique NameCX289594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length451
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_PYRKO (Peptidyl-tRNA hydrolase OS=Pyrococcus kodakaraensis GN=pth PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.085e-19
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    4 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            R+DLK+  GK A Q AH A     +  +      + W   GQ K+VV  +N +E+ KL   AE  GLPT ++ DAG T++  G+ TVLAIGPGP+ +VD VTG  +LL
Sbjct:   11 RKDLKLSKGKFAVQVAHGAVTAAIKAQKEKPEWFKAWFHEGQKKVVVKAENLEELFKLKAEAEKLGLPTALIKDAGLTEIPPGTVTVLAIGPGPEEVVDKVTGHLKLL 118          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_PYRHO (Peptidyl-tRNA hydrolase OS=Pyrococcus horikoshii GN=pth PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.253e-19
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    4 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            R DLK+  GK+A+Q AH A     E  +  R     W + GQ K+VV  ++++E+ KL   AE  GLP  ++ DAG T++  G+ TVLA+GP P+ +VD VTG  +LL
Sbjct:   14 RADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_PYRAB (Peptidyl-tRNA hydrolase OS=Pyrococcus abyssi GN=pth PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.253e-19
Identity = 48/109 (44.04%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR+DLK+  GK+A Q AH A     +  +  R    KW   GQ K+VV  ++  E+ KL   AE   LPT ++ DAG T++  G+ TVLAIGPGP  ++D VTG  +LL
Sbjct:   13 VRKDLKLSKGKLAVQVAHGAVTAAFKAYKEKREWFEKWFHEGQKKVVVKVESLDELFKLKAEAEKLNLPTALIQDAGLTEIPPGTITVLAIGPGPSEIIDKVTGHLKLL 121          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_SULIY (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pth PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.209e-18
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    8 VRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_SULIN (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pth PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.209e-18
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    8 VRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_SULIM (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pth PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.209e-18
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    8 VRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_SULIL (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pth PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.209e-18
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    8 VRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_SULIK (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pth PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.209e-18
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    8 VRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_SULIA (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.16.27) GN=pth PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.209e-18
Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    8 VRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH2_YEAST (Peptidyl-tRNA hydrolase 2 OS=Saccharomyces cerevisiae GN=PTH2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.578e-18
Identity = 45/114 (39.47%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRH------LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 324
            +RQDL M  GKIA+QC HAA   +  +  +         + ++W   GQ KI + C ++  M++L+  A + G+   V+ DAGRTQ++AGS TVL +GP PK+++D +TG  +L
Sbjct:  100 IRQDLGMTKGKIAAQCCHAALSCFRHIATNPARASYNPIMTQRWLNAGQAKITLKCPDKFTMDELYAKAISLGVNAAVIHDAGRTQIAAGSATVLGLGPAPKAVLDQITGDLKL 213          
The following BLAST results are available for this feature:
BLAST of CX289594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PTH_PYRKO7.085e-1944.44Peptidyl-tRNA hydrolase OS=Pyrococcus kodakaraensi... [more]
PTH_PYRHO9.253e-1942.59Peptidyl-tRNA hydrolase OS=Pyrococcus horikoshii G... [more]
PTH_PYRAB9.253e-1944.04Peptidyl-tRNA hydrolase OS=Pyrococcus abyssi GN=pt... [more]
PTH_SULIY1.209e-1842.48Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH_SULIN1.209e-1842.48Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH_SULIM1.209e-1842.48Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH_SULIL1.209e-1842.48Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH_SULIK1.209e-1842.48Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH_SULIA1.209e-1842.48Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH2_YEAST1.578e-1839.47Peptidyl-tRNA hydrolase 2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC02015A08SK IF1 Citrus clementina cDNA clone C02015A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289594 ID=CX289594; Name=CX289594; organism=Citrus clementina; type=EST; length=451bp
GTTAGGCAAGACCTGAAGATGGGGAGTGGAAAGATTGCATCACAATGTGC
CCATGCAGCCACTGGGATGTATGCAGAACTAATGCAAAGTGACCGGCACC
TTCTGAGAAAATGGGAGCAATGTGGGCAGCCCAAGATAGTTGTTACGTGC
AAGAATCAACAAGAAATGAATAAGCTGTGGGAAGTAGCTGAAAACACGGG
CCTTCCAACTTTTGTTGTTGCGGATGCTGGACGGACACAGGTTTCAGCTG
GGTCGAAGACGGTTCTTGCCATCGGACCTGGACCCAAATCTTTGGTGGAT
TCTGTGACAGGGAAACAGCGCCTGCTCTAGTTATGCTTAAGAATGGAGGA
CTTTTTGCTTAAAATTTCCCGGATGACAATGTTAAAAGATCAAGATTACC
AACAAAATCTTCTTGACTCTTGGTTTCATTTGCCAGGCAGCTTTCATATT
C
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