CX289594

Overview
NameCX289594
Unique NameCX289594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length451
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH2_DICDI (Probable peptidyl-tRNA hydrolase 2 OS=Dictyostelium discoideum GN=pth2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.692e-18
Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 324
            +R DL M  GKI +QC HA+ G   + ++  + +LR+WE  G  KI +   +++E+  L   A+  G+ +++V D+G TQ+ +GS TVLA+GP PK  VD+VT   +L
Sbjct:  102 IRTDLGMTKGKIIAQCCHASLGARQKALKDSKKVLRQWENFGCAKITLKANSKEELVDLRNKAKELGVVSYLVLDSGHTQIPSGSATVLAVGPAPKEAVDAVTKHLKL 209          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_CALMQ (Peptidyl-tRNA hydrolase OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=pth PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.516e-18
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR DL+M  GK+A Q AHAA     E +++    +  W   GQ KIV+   + +++ +L   AE+ GLPT ++ DAG T++  G+ T LAIGPGP+ LV+ VTG  +LL
Sbjct:   10 VRGDLRMSRGKLAVQVAHAAVSAVLEALRNRGDWVNAWVSGGQKKIVLVVDSVEDLIRLKAKAESLGLPTALIEDAGLTELPPGTVTALAIGPGPEELVNKVTGSLKLL 118          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_HALSA (Peptidyl-tRNA hydrolase OS=Halobacterium salinarium GN=pth PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.592e-18
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    4 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTG 312
            R D+ MG GK+A+Q AHA+   Y     +D   +R+W+  GQ K+VV   +++E+ +  E A+  GLPT +++DAGRTQ+  G+ T LAIGP P + VD +TG
Sbjct:    8 RTDIGMGQGKLAAQVAHASLNAYE---YTDDRAVRRWKDEGQTKVVVKVGSERELYERSEEAKRAGLPTGLISDAGRTQLEPGTPTALAIGPAPDADVDQITG 107          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_HALS3 (Peptidyl-tRNA hydrolase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=pth PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.592e-18
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    4 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTG 312
            R D+ MG GK+A+Q AHA+   Y     +D   +R+W+  GQ K+VV   +++E+ +  E A+  GLPT +++DAGRTQ+  G+ T LAIGP P + VD +TG
Sbjct:    8 RTDIGMGQGKLAAQVAHASLNAYE---YTDDRAVRRWKDEGQTKVVVKVGSERELYERSEEAKRAGLPTGLISDAGRTQLEPGTPTALAIGPAPDADVDQITG 107          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METKA (Peptidyl-tRNA hydrolase OS=Methanopyrus kandleri GN=pth PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.023e-17
Identity = 46/109 (42.20%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR DLK+  GK+A+Q AHA+ G +    +S   +  +W + GQ K+V+ CK+++E+ +L E+A+  GLP+F+V DAG T++  G+ T L IGP  +  +D VTG   LL
Sbjct:    8 VRGDLKLSRGKLAAQVAHASLGAFLRAKESGAPV-EEWLREGQKKVVLKCKDKEELLELHELAKRRGLPSFLVRDAGLTELEPGTVTCLGIGPEREEEIDRVTGDLPLL 115          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_THEON (Peptidyl-tRNA hydrolase OS=Thermococcus onnurineus (strain NA1) GN=pth PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.336e-17
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            +R+DLK+  GK+A Q AH A     ++ +      + W   GQ K+VV  +N++E+ +L   AE  G+PT ++ DAG T++  G+ T LA+GP P+ LVD VTG  +L+
Sbjct:   10 IRKDLKLSKGKMAVQVAHGAVTAALKVQKEKPEWFKAWFHEGQKKVVVKAENERELFELKAHAEKLGIPTALIRDAGLTEIPPGTITCLAVGPAPEELVDKVTGHLKLV 118          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METTH (Peptidyl-tRNA hydrolase OS=Methanobacterium thermoautotrophicum GN=pth PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.745e-17
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR DLKMG GKIA+Q  HA+ G +    +++   +RKWE  G  K++V+  +  E+ +++   +  G+  ++V DAG TQ+ AG+ T L IGP     +D +TG  +LL
Sbjct:    7 VRSDLKMGKGKIAAQACHASIGSFK---RTEEDKIRKWELEGSKKVIVSVNSLDELLEIYRAVKEAGISNYLVRDAGHTQIPAGTITCLGIGPDDDEKIDKITGDLKLL 112          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_HALMA (Peptidyl-tRNA hydrolase OS=Haloarcula marismortui GN=pth PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.631e-17
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    4 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTG 312
            R D+ MG GK+A+Q AHA+   Y +     R   + W+  GQ K+V+   ++ E+ +L +VAE  GLP  VV DAG TQ+  G+ T LA+GP    LVD VTG
Sbjct:    8 RADIGMGEGKLAAQVAHASLSAYEDAGPKPR---KAWKGAGQKKVVLKATSESELFELADVAEREGLPHAVVRDAGHTQLDPGTVTALAVGPAEDELVDRVTG 107          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_THESM (Peptidyl-tRNA hydrolase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=pth PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.298e-16
Identity = 41/109 (37.61%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR DLK+  GK+A Q AH A     +  +      + W   GQ K+VV  ++++E+ +L   AE  G+P  ++ DAG T++  G+ T LAIGPGP+ +V+ +TG  +L+
Sbjct:   10 VRSDLKLSKGKLAVQVAHGAVTAAFKAYKEKPEWFKGWFNEGQKKVVVKAESERELFELKAEAEKLGIPNSLIRDAGLTEIPPGTITCLAIGPGPEEIVNKITGNLKLV 118          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_THEAC (Peptidyl-tRNA hydrolase OS=Thermoplasma acidophilum GN=pth PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.614e-16
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR+DL MG GKIA+Q AHAA       M+ +R +  +W   GQ KIVV   +  E+ ++  +A++ G+   +V D G TQV  G+ T + +GP  +  +D +TGK +LL
Sbjct:    9 VRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 117          
The following BLAST results are available for this feature:
BLAST of CX289594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PTH2_DICDI2.692e-1839.81Probable peptidyl-tRNA hydrolase 2 OS=Dictyosteliu... [more]
PTH_CALMQ3.516e-1843.12Peptidyl-tRNA hydrolase OS=Caldivirga maquilingens... [more]
PTH_HALSA4.592e-1843.69Peptidyl-tRNA hydrolase OS=Halobacterium salinariu... [more]
PTH_HALS34.592e-1843.69Peptidyl-tRNA hydrolase OS=Halobacterium salinarum... [more]
PTH_METKA1.023e-1742.20Peptidyl-tRNA hydrolase OS=Methanopyrus kandleri G... [more]
PTH_THEON1.336e-1739.45Peptidyl-tRNA hydrolase OS=Thermococcus onnurineus... [more]
PTH_METTH1.745e-1738.53Peptidyl-tRNA hydrolase OS=Methanobacterium thermo... [more]
PTH_HALMA6.631e-1743.69Peptidyl-tRNA hydrolase OS=Haloarcula marismortui ... [more]
PTH_THESM4.298e-1637.61Peptidyl-tRNA hydrolase OS=Thermococcus sibiricus ... [more]
PTH_THEAC5.614e-1639.45Peptidyl-tRNA hydrolase OS=Thermoplasma acidophilu... [more]

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Properties
Property NameValue
Genbank descriptionC02015A08SK IF1 Citrus clementina cDNA clone C02015A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289594 ID=CX289594; Name=CX289594; organism=Citrus clementina; type=EST; length=451bp
GTTAGGCAAGACCTGAAGATGGGGAGTGGAAAGATTGCATCACAATGTGC
CCATGCAGCCACTGGGATGTATGCAGAACTAATGCAAAGTGACCGGCACC
TTCTGAGAAAATGGGAGCAATGTGGGCAGCCCAAGATAGTTGTTACGTGC
AAGAATCAACAAGAAATGAATAAGCTGTGGGAAGTAGCTGAAAACACGGG
CCTTCCAACTTTTGTTGTTGCGGATGCTGGACGGACACAGGTTTCAGCTG
GGTCGAAGACGGTTCTTGCCATCGGACCTGGACCCAAATCTTTGGTGGAT
TCTGTGACAGGGAAACAGCGCCTGCTCTAGTTATGCTTAAGAATGGAGGA
CTTTTTGCTTAAAATTTCCCGGATGACAATGTTAAAAGATCAAGATTACC
AACAAAATCTTCTTGACTCTTGGTTTCATTTGCCAGGCAGCTTTCATATT
C
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