CX289594

Overview
NameCX289594
Unique NameCX289594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length451
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_STAMF (Peptidyl-tRNA hydrolase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=pth PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.332e-16
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR D+KM  GK+A Q AHAA     E  +  R    +W   GQ KIVV   +++++ K  E+A+   LP  ++ DAG T++   + T + IGPGP   +D +TG  +LL
Sbjct:   13 VRTDIKMSKGKLAVQVAHAAVSAAFEAYKKKREWFLEWWATGQKKIVVKGGSERDLLKYAEMAKKKDLPVAIIRDAGLTELPPNTLTAVGIGPGPSRKIDEITGDLKLL 121          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_AERPE (Peptidyl-tRNA hydrolase OS=Aeropyrum pernix GN=pth PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.332e-16
Identity = 44/112 (39.29%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQC----GQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 324
            VR+DL MG GK A+Q AHA+      +++S R   R+W +     GQ K+V+  ++  E+ +++  A   GLP   V DAG+TQ+  G+ T  A+GP P  LVD +TG  +L
Sbjct:   12 VRRDLGMGRGKAAAQAAHASCEAVFLILESGRPEWRRWLEMWRLQGQAKVVLRVESLAELQEVYSKAVEEGLPASFVRDAGKTQLEPGTPTAAAVGPAPSRLVDRITGGLKL 123          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH2_CAEEL (Probable peptidyl-tRNA hydrolase 2 OS=Caenorhabditis elegans GN=C24G6.8 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.332e-16
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 1
Query:   13 LKMGSGKIASQCAHAATGMYAELMQSD--RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            LKMG+GKIA+Q  HA  G+Y + M S+  ++ +  W + GQ KIVV  ++ +++  L +VA++ G   ++V DAG TQ+ AGS+TVL I  G    VDSVTG  +LL
Sbjct:  211 LKMGTGKIAAQVGHATLGVYRQAMNSENGQNAIAAWTRHGQVKIVVKGQSTEQLMDLCKVAKDAGCYYYLVQDAGYTQIPAGSRTVLGIF-GTVEQVDSVTGGLKLL 316          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_PYRAE (Peptidyl-tRNA hydrolase OS=Pyrobaculum aerophilum GN=pth PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.251e-15
Identity = 46/110 (41.82%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSD--RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 324
            +R DLK+  GK A+Q  HAA       M     R  L +W + GQ KIV+T  +   + +L E A++ GLPT VV DAG T++  G+ T + +GP P  LVD VTG  +L
Sbjct:    9 IRGDLKISCGKAAAQAGHAAVECVLAAMGDAKWRKWLDQWLEEGQKKIVLTADDAAHLYQLHERAKSLGLPTAVVIDAGLTELPPGTPTAICVGPAPDELVDKVTGSLKL 118          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METBU (Peptidyl-tRNA hydrolase OS=Methanococcoides burtonii (strain DSM 6242) GN=pth PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.251e-15
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            +R DLK+  GK+A Q AHAA        +SD   L  W++ GQ K+V+  +  Q++ +L E A   GL T ++ DAG T+++ G+ TVL IGP     +D VTG  +L+
Sbjct:   10 IRDDLKLSKGKLAVQVAHAAVSAAEWASRSD---LENWKEGGQKKVVLRVEKLQDLFELKEKARREGLSTALITDAGLTEIAPGTVTVLGIGPARADYIDKVTGNLKLV 115          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METAC (Peptidyl-tRNA hydrolase OS=Methanosarcina acetivorans GN=pth PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.251e-15
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    4 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            R DLK+  GK A Q AHAA        +SD   L KW++ GQ KIV+     +++ +L E A   GLPT ++ DAG T++ AG+ TVL IGP  + ++D VT   +L+
Sbjct:   11 RDDLKLSKGKFAVQVAHAALSAAEWASKSD---LEKWKEGGQKKIVLRVPTIKDLYELKEKARREGLPTALIQDAGLTEIPAGTVTVLGIGPAKEEVIDKVTRDLKLV 115          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_THEVO (Peptidyl-tRNA hydrolase OS=Thermoplasma volcanium GN=pth PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.633e-15
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR+DL MG GKIA+Q AHAA     + M+  + +  +W   GQ KIVV   N  E+  + + A++ G+   V+ D G TQV  G+ T + +GP  +  +D +TGK +LL
Sbjct:    9 VRKDLDMGKGKIAAQVAHAAVSCAIKAMKEKKKIFDEWMDEGQKKIVVKVPNVDEIYIIKKKADSMGIINEVIQDRGYTQVEPGTVTCIGLGPDYEVYLDDITGKYKLL 117          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METBF (Peptidyl-tRNA hydrolase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=pth PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    4 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            R+DLK+  GK A Q AHAA        ++D   L KW++ GQ KIV+      ++ +L E A   GLPT ++ DAG T++  G+ TVL IGP  + L+D VT   +L+
Sbjct:   11 REDLKLSKGKFAVQVAHAAISASEWASKND---LEKWKEGGQKKIVLKVPTLNDLYELKEKARREGLPTALIQDAGLTEIPPGTVTVLGIGPAKEELIDKVTRNLKLV 115          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_ARCFU (Peptidyl-tRNA hydrolase OS=Archaeoglobus fulgidus GN=pth PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 48/109 (44.04%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            VR DLK+  GK+A Q AHAA   Y   ++SD  L RKW   GQ K+V+  K+ +E+  +   AE+ GL T +V DAG T+V  G+ T + IGP  +  +D VTG   LL
Sbjct:    9 VRDDLKLSRGKLAVQVAHAAIIGY---LKSDSSLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL 114          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METMA (Peptidyl-tRNA hydrolase OS=Methanosarcina mazei GN=pth PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    4 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            R DLK+  GK A Q AHAA        + D   L KW++ GQ KIV+   + +E+ +L E A   GLPT ++ DAG T++  G+ TVL IGP  + L+D +T   +L+
Sbjct:   11 RDDLKLSKGKFAVQVAHAALSAAEWASKGD---LEKWKEGGQKKIVLKVPSIKELYELKEKARREGLPTALIQDAGLTEIPPGTVTVLGIGPAKEELIDKITKDLKLV 115          
The following BLAST results are available for this feature:
BLAST of CX289594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PTH_STAMF7.332e-1638.53Peptidyl-tRNA hydrolase OS=Staphylothermus marinus... [more]
PTH_AERPE7.332e-1639.29Peptidyl-tRNA hydrolase OS=Aeropyrum pernix GN=pth... [more]
PTH2_CAEEL7.332e-1644.86Probable peptidyl-tRNA hydrolase 2 OS=Caenorhabdit... [more]
PTH_PYRAE1.251e-1541.82Peptidyl-tRNA hydrolase OS=Pyrobaculum aerophilum ... [more]
PTH_METBU1.251e-1539.45Peptidyl-tRNA hydrolase OS=Methanococcoides burton... [more]
PTH_METAC1.251e-1541.67Peptidyl-tRNA hydrolase OS=Methanosarcina acetivor... [more]
PTH_THEVO1.633e-1539.45Peptidyl-tRNA hydrolase OS=Thermoplasma volcanium ... [more]
PTH_METBF2.133e-1540.74Peptidyl-tRNA hydrolase OS=Methanosarcina barkeri ... [more]
PTH_ARCFU2.133e-1544.04Peptidyl-tRNA hydrolase OS=Archaeoglobus fulgidus ... [more]
PTH_METMA2.786e-1540.74Peptidyl-tRNA hydrolase OS=Methanosarcina mazei GN... [more]

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Properties
Property NameValue
Genbank descriptionC02015A08SK IF1 Citrus clementina cDNA clone C02015A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289594 ID=CX289594; Name=CX289594; organism=Citrus clementina; type=EST; length=451bp
GTTAGGCAAGACCTGAAGATGGGGAGTGGAAAGATTGCATCACAATGTGC
CCATGCAGCCACTGGGATGTATGCAGAACTAATGCAAAGTGACCGGCACC
TTCTGAGAAAATGGGAGCAATGTGGGCAGCCCAAGATAGTTGTTACGTGC
AAGAATCAACAAGAAATGAATAAGCTGTGGGAAGTAGCTGAAAACACGGG
CCTTCCAACTTTTGTTGTTGCGGATGCTGGACGGACACAGGTTTCAGCTG
GGTCGAAGACGGTTCTTGCCATCGGACCTGGACCCAAATCTTTGGTGGAT
TCTGTGACAGGGAAACAGCGCCTGCTCTAGTTATGCTTAAGAATGGAGGA
CTTTTTGCTTAAAATTTCCCGGATGACAATGTTAAAAGATCAAGATTACC
AACAAAATCTTCTTGACTCTTGGTTTCATTTGCCAGGCAGCTTTCATATT
C
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